Miyakogusa Predicted Gene

Lj1g3v1732340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1732340.1 Non Characterized Hit- tr|B6UHS8|B6UHS8_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,52.33,2e-16,
,CUFF.27730.1
         (90 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017920.1 | hypothetical protein | HC | chr1:5113230-51118...   110   3e-25

>Medtr1g017920.1 | hypothetical protein | HC | chr1:5113230-5111821
           | 20130731
          Length = 366

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 3/85 (3%)

Query: 1   MVGQPQCSWLKSMV--TCTRISGEVTLNLPFDSSVPISSNGFSCWVRIDWKRDHKNTSSV 58
           MVGQP+C WL+     +C RISGEVTL L   S++PISSNGFSCWVRI+W+ + +  + V
Sbjct: 270 MVGQPECPWLEIQCGSSCKRISGEVTLQLSDSSNIPISSNGFSCWVRIEWENNGQKKNCV 329

Query: 59  NAFCDVMRLSC-ESKHYLFTWRFHT 82
           NAFCDV++L C +S+ Y+FTWRFHT
Sbjct: 330 NAFCDVVKLCCDQSRDYVFTWRFHT 354