Miyakogusa Predicted Gene

Lj1g3v1732300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1732300.1 tr|B9IBR2|B9IBR2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_823869 PE=4
SV=1,59.46,0.0002,seg,NULL; coiled-coil,NULL,CUFF.27727.1
         (66 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g103180.1 | hypothetical protein | HC | chr3:47563535-4756...    51   2e-07

>Medtr3g103180.1 | hypothetical protein | HC |
          chr3:47563535-47561463 | 20130731
          Length = 65

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1  MGLCFGCFDGGNKRMTXXXXXXXXXXXXXXXXXXXXXXXXXXGGAKQPDMGKQPENSNNG 60
          MGLCFGCFDGGNKRMT                          G  KQ    KQ ENSNNG
Sbjct: 1  MGLCFGCFDGGNKRMTKEEERLASEEARARAAEAAQKKLEQQGEVKQSGE-KQVENSNNG 59

Query: 61 EQFVKV 66
          E FVKV
Sbjct: 60 EPFVKV 65