Miyakogusa Predicted Gene
- Lj1g3v1720220.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1720220.1 Non Characterized Hit- tr|I1JTQ4|I1JTQ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8919
PE=,76.1,0,UBA-like,UBA-like; CUE,Ubiquitin system component Cue;
SUBFAMILY NOT NAMED,NULL; ACTIVATING SIGNAL C,CUFF.27720.1
(852 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g103040.2 | ubiquitin system component CUE protein | HC | ... 913 0.0
Medtr3g103040.1 | ubiquitin system component CUE protein | HC | ... 909 0.0
Medtr3g103040.3 | ubiquitin system component CUE protein | HC | ... 756 0.0
>Medtr3g103040.2 | ubiquitin system component CUE protein | HC |
chr3:47458173-47466830 | 20130731
Length = 862
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/806 (60%), Positives = 554/806 (68%), Gaps = 26/806 (3%)
Query: 66 FVKYLPQXXXXXXXXXXXXXXXXPIESQRVVDXXXXXXXXXXXXXPKEFWKQVAADTSLH 125
FV YLPQ +ESQ+VVD PK+FW QVA+DTSLH
Sbjct: 64 FVYYLPQDEAVAAGFGAEDGGLDALESQKVVDLLNSQLSCLLKLKPKDFWSQVASDTSLH 123
Query: 126 AFLDSFLQFRSRWYDFPHRGVKGILAGVIVGEIDLSRRVFMVLYRISSNKDPGGRPADTL 185
FL+SFLQFRSRWYDFPHRG +GI+AGVI GE DLSRRVFM+LYR+SSN+DPG RPADTL
Sbjct: 124 EFLNSFLQFRSRWYDFPHRGARGIVAGVIFGEHDLSRRVFMMLYRMSSNRDPGARPADTL 183
Query: 186 SSRDHGVXXXXXXXXXXXXXXDICAIYYHENEELTRLLVRNALSAQPWIHNSLPSVISHF 245
SS+DH V DICAIY HENEELTRLLV+NAL AQPW+H++L +V SHF
Sbjct: 184 SSKDHEVLLQEKKLLDLPKLFDICAIYSHENEELTRLLVKNALHAQPWLHDNLAAVTSHF 243
Query: 246 MGIVSTMHERCXXXXXXXXXXXXPDNQNATFLQADLLEVMDFINDAIVSLDAFVNTFEPA 305
M IVSTMHERC D+ NAT L+ DLLEVMDFINDAIVS+DAFV+ +E A
Sbjct: 244 MVIVSTMHERCSSSLEVLFASESLDDHNATLLKTDLLEVMDFINDAIVSMDAFVSAYEQA 303
Query: 306 AVFFSCPVEMSYGNEEXXXXXXXXXXXXIPSLQKGFQIIFADKQDDRVSNTLVSLKMLRI 365
A+ FS PVEM YGNEE IPS+QKGF IIFA KQDD VSN +VSLKMLR+
Sbjct: 304 ALLFSSPVEMRYGNEEMLSFLARLHDSLIPSMQKGFHIIFAGKQDDTVSNIVVSLKMLRM 363
Query: 366 RLVNFGWQLLHFCYLSDEVFRDSIPLAAVTKMFPANVEDPVIRADILVQTLREINSVSLC 425
RLV FGWQLLHFCYLSD+VF DSIPL A TKMFPANVEDPVIRADILVQT REINSVSL
Sbjct: 364 RLVKFGWQLLHFCYLSDDVFLDSIPLPAATKMFPANVEDPVIRADILVQTFREINSVSLS 423
Query: 426 FQEILPKKTFLQDVERNFNLLSRIERLKDNGWIFMDDEQFQYISGILXXXXXXXXXXXXT 485
FQEI K+TFLQ VERNFN+ SRIE LK NGWIF++DEQ +YIS IL +
Sbjct: 424 FQEIHKKETFLQGVERNFNISSRIEGLKHNGWIFVEDEQLKYISEILSSLKETINREPYS 483
Query: 486 M-TTVPNQALRMDEDAAIIESKISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEDT 544
+VPNQ ++ DEDAA++ESKISQIRDLFPDYGKGFL+ACLEVYD NPEEVIQRILE T
Sbjct: 484 AKISVPNQTMQTDEDAAVLESKISQIRDLFPDYGKGFLSACLEVYDHNPEEVIQRILEGT 543
Query: 545 LHEDLRCLDTSLETVPQSLAKTTTVSRIDKGKGK-------------LIDXXXXXXXXXX 591
LH DL+CLDTSLETVPQ AK+T VS DKGKG LID
Sbjct: 544 LHNDLKCLDTSLETVPQLQAKSTAVSGKDKGKGVLIDVSGKDKGKGILIDSTSVSSNTKV 603
Query: 592 XXGKQQTEAPLMPSSAPLGKFIRKSRADAPPDLSILDKKDEKDVLKTAMLSQXXXXXXXX 651
GK TE LMPSSAPLGKF+RKSRAD PD SILD DEKD + + Q
Sbjct: 604 SNGKNLTEGSLMPSSAPLGKFVRKSRADR-PDPSILDNNDEKD---ASRILQYEYDDEYD 659
Query: 652 XXXXXLGLSVGDSGLEENEILGDKMN-AMPQSWAKETGNSGQNAPNAKWGSKKKPQFYVK 710
LGLSV +SG+EE+E++ D+MN + +S TGNSGQNA N KWGS++KPQ+YVK
Sbjct: 660 DSFDDLGLSVAESGVEESEVIDDEMNEKLGKSRETGTGNSGQNASNTKWGSRQKPQYYVK 719
Query: 711 DGKNYSYKVAGATAVANSDEASLLNQAQKELIHGLGRGGNHPFGAVRKFTE-FK--DNDN 767
DGKNYSYKVAGA AVANS+EASL+N+AQKELIHGLGRGGN P GAV+K + +K N
Sbjct: 720 DGKNYSYKVAGAVAVANSNEASLVNEAQKELIHGLGRGGNLPLGAVQKLADSYKGGGGGN 779
Query: 768 QSHVSETEGRGVLXXXXXXXXXXXXKQTEPHQPQETQSNG-SEMEGQDHVSNNXXXXXXX 826
Q HVS TE + E +Q QE QS+ SE+EG+D NN
Sbjct: 780 QFHVSGTE---GRGSGGGRGKREGGRHIEHNQHQEKQSDDVSEVEGRDQGPNNRGRGRGR 836
Query: 827 XXXXXXSNHYRKDQAMKKHFSGLGGF 852
+NHYRKDQAMKKHFSGL GF
Sbjct: 837 GRGGGRNNHYRKDQAMKKHFSGLSGF 862
>Medtr3g103040.1 | ubiquitin system component CUE protein | HC |
chr3:47458341-47466512 | 20130731
Length = 915
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/805 (60%), Positives = 553/805 (68%), Gaps = 26/805 (3%)
Query: 66 FVKYLPQXXXXXXXXXXXXXXXXPIESQRVVDXXXXXXXXXXXXXPKEFWKQVAADTSLH 125
FV YLPQ +ESQ+VVD PK+FW QVA+DTSLH
Sbjct: 64 FVYYLPQDEAVAAGFGAEDGGLDALESQKVVDLLNSQLSCLLKLKPKDFWSQVASDTSLH 123
Query: 126 AFLDSFLQFRSRWYDFPHRGVKGILAGVIVGEIDLSRRVFMVLYRISSNKDPGGRPADTL 185
FL+SFLQFRSRWYDFPHRG +GI+AGVI GE DLSRRVFM+LYR+SSN+DPG RPADTL
Sbjct: 124 EFLNSFLQFRSRWYDFPHRGARGIVAGVIFGEHDLSRRVFMMLYRMSSNRDPGARPADTL 183
Query: 186 SSRDHGVXXXXXXXXXXXXXXDICAIYYHENEELTRLLVRNALSAQPWIHNSLPSVISHF 245
SS+DH V DICAIY HENEELTRLLV+NAL AQPW+H++L +V SHF
Sbjct: 184 SSKDHEVLLQEKKLLDLPKLFDICAIYSHENEELTRLLVKNALHAQPWLHDNLAAVTSHF 243
Query: 246 MGIVSTMHERCXXXXXXXXXXXXPDNQNATFLQADLLEVMDFINDAIVSLDAFVNTFEPA 305
M IVSTMHERC D+ NAT L+ DLLEVMDFINDAIVS+DAFV+ +E A
Sbjct: 244 MVIVSTMHERCSSSLEVLFASESLDDHNATLLKTDLLEVMDFINDAIVSMDAFVSAYEQA 303
Query: 306 AVFFSCPVEMSYGNEEXXXXXXXXXXXXIPSLQKGFQIIFADKQDDRVSNTLVSLKMLRI 365
A+ FS PVEM YGNEE IPS+QKGF IIFA KQDD VSN +VSLKMLR+
Sbjct: 304 ALLFSSPVEMRYGNEEMLSFLARLHDSLIPSMQKGFHIIFAGKQDDTVSNIVVSLKMLRM 363
Query: 366 RLVNFGWQLLHFCYLSDEVFRDSIPLAAVTKMFPANVEDPVIRADILVQTLREINSVSLC 425
RLV FGWQLLHFCYLSD+VF DSIPL A TKMFPANVEDPVIRADILVQT REINSVSL
Sbjct: 364 RLVKFGWQLLHFCYLSDDVFLDSIPLPAATKMFPANVEDPVIRADILVQTFREINSVSLS 423
Query: 426 FQEILPKKTFLQDVERNFNLLSRIERLKDNGWIFMDDEQFQYISGILXXXXXXXXXXXXT 485
FQEI K+TFLQ VERNFN+ SRIE LK NGWIF++DEQ +YIS IL +
Sbjct: 424 FQEIHKKETFLQGVERNFNISSRIEGLKHNGWIFVEDEQLKYISEILSSLKETINREPYS 483
Query: 486 M-TTVPNQALRMDEDAAIIESKISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEDT 544
+VPNQ ++ DEDAA++ESKISQIRDLFPDYGKGFL+ACLEVYD NPEEVIQRILE T
Sbjct: 484 AKISVPNQTMQTDEDAAVLESKISQIRDLFPDYGKGFLSACLEVYDHNPEEVIQRILEGT 543
Query: 545 LHEDLRCLDTSLETVPQSLAKTTTVSRIDKGKGK-------------LIDXXXXXXXXXX 591
LH DL+CLDTSLETVPQ AK+T VS DKGKG LID
Sbjct: 544 LHNDLKCLDTSLETVPQLQAKSTAVSGKDKGKGVLIDVSGKDKGKGILIDSTSVSSNTKV 603
Query: 592 XXGKQQTEAPLMPSSAPLGKFIRKSRADAPPDLSILDKKDEKDVLKTAMLSQXXXXXXXX 651
GK TE LMPSSAPLGKF+RKSRAD PD SILD DEKD + + Q
Sbjct: 604 SNGKNLTEGSLMPSSAPLGKFVRKSRADR-PDPSILDNNDEKD---ASRILQYEYDDEYD 659
Query: 652 XXXXXLGLSVGDSGLEENEILGDKMN-AMPQSWAKETGNSGQNAPNAKWGSKKKPQFYVK 710
LGLSV +SG+EE+E++ D+MN + +S TGNSGQNA N KWGS++KPQ+YVK
Sbjct: 660 DSFDDLGLSVAESGVEESEVIDDEMNEKLGKSRETGTGNSGQNASNTKWGSRQKPQYYVK 719
Query: 711 DGKNYSYKVAGATAVANSDEASLLNQAQKELIHGLGRGGNHPFGAVRKFTE-FK--DNDN 767
DGKNYSYKVAGA AVANS+EASL+N+AQKELIHGLGRGGN P GAV+K + +K N
Sbjct: 720 DGKNYSYKVAGAVAVANSNEASLVNEAQKELIHGLGRGGNLPLGAVQKLADSYKGGGGGN 779
Query: 768 QSHVSETEGRGVLXXXXXXXXXXXXKQTEPHQPQETQSNG-SEMEGQDHVSNNXXXXXXX 826
Q HVS TE + E +Q QE QS+ SE+EG+D NN
Sbjct: 780 QFHVSGTE---GRGSGGGRGKREGGRHIEHNQHQEKQSDDVSEVEGRDQGPNNRGRGRGR 836
Query: 827 XXXXXXSNHYRKDQAMKKHFSGLGG 851
+NHYRKDQAMKKHFSGL G
Sbjct: 837 GRGGGRNNHYRKDQAMKKHFSGLSG 861
>Medtr3g103040.3 | ubiquitin system component CUE protein | HC |
chr3:47458214-47466512 | 20130731
Length = 724
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/664 (61%), Positives = 464/664 (69%), Gaps = 26/664 (3%)
Query: 207 DICAIYYHENEELTRLLVRNALSAQPWIHNSLPSVISHFMGIVSTMHERCXXXXXXXXXX 266
DICAIY HENEELTRLLV+NAL AQPW+H++L +V SHFM IVSTMHERC
Sbjct: 14 DICAIYSHENEELTRLLVKNALHAQPWLHDNLAAVTSHFMVIVSTMHERCSSSLEVLFAS 73
Query: 267 XXPDNQNATFLQADLLEVMDFINDAIVSLDAFVNTFEPAAVFFSCPVEMSYGNEEXXXXX 326
D+ NAT L+ DLLEVMDFINDAIVS+DAFV+ +E AA+ FS PVEM YGNEE
Sbjct: 74 ESLDDHNATLLKTDLLEVMDFINDAIVSMDAFVSAYEQAALLFSSPVEMRYGNEEMLSFL 133
Query: 327 XXXXXXXIPSLQKGFQIIFADKQDDRVSNTLVSLKMLRIRLVNFGWQLLHFCYLSDEVFR 386
IPS+QKGF IIFA KQDD VSN +VSLKMLR+RLV FGWQLLHFCYLSD+VF
Sbjct: 134 ARLHDSLIPSMQKGFHIIFAGKQDDTVSNIVVSLKMLRMRLVKFGWQLLHFCYLSDDVFL 193
Query: 387 DSIPLAAVTKMFPANVEDPVIRADILVQTLREINSVSLCFQEILPKKTFLQDVERNFNLL 446
DSIPL A TKMFPANVEDPVIRADILVQT REINSVSL FQEI K+TFLQ VERNFN+
Sbjct: 194 DSIPLPAATKMFPANVEDPVIRADILVQTFREINSVSLSFQEIHKKETFLQGVERNFNIS 253
Query: 447 SRIERLKDNGWIFMDDEQFQYISGILXXXXXXXXXXXXTM-TTVPNQALRMDEDAAIIES 505
SRIE LK NGWIF++DEQ +YIS IL + +VPNQ ++ DEDAA++ES
Sbjct: 254 SRIEGLKHNGWIFVEDEQLKYISEILSSLKETINREPYSAKISVPNQTMQTDEDAAVLES 313
Query: 506 KISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEDTLHEDLRCLDTSLETVPQSLAK 565
KISQIRDLFPDYGKGFL+ACLEVYD NPEEVIQRILE TLH DL+CLDTSLETVPQ AK
Sbjct: 314 KISQIRDLFPDYGKGFLSACLEVYDHNPEEVIQRILEGTLHNDLKCLDTSLETVPQLQAK 373
Query: 566 TTTVSRIDKGKGK-------------LIDXXXXXXXXXXXXGKQQTEAPLMPSSAPLGKF 612
+T VS DKGKG LID GK TE LMPSSAPLGKF
Sbjct: 374 STAVSGKDKGKGVLIDVSGKDKGKGILIDSTSVSSNTKVSNGKNLTEGSLMPSSAPLGKF 433
Query: 613 IRKSRADAPPDLSILDKKDEKDVLKTAMLSQXXXXXXXXXXXXXLGLSVGDSGLEENEIL 672
+RKSRAD PD SILD DEKD + + Q LGLSV +SG+EE+E++
Sbjct: 434 VRKSRADR-PDPSILDNNDEKD---ASRILQYEYDDEYDDSFDDLGLSVAESGVEESEVI 489
Query: 673 GDKMN-AMPQSWAKETGNSGQNAPNAKWGSKKKPQFYVKDGKNYSYKVAGATAVANSDEA 731
D+MN + +S TGNSGQNA N KWGS++KPQ+YVKDGKNYSYKVAGA AVANS+EA
Sbjct: 490 DDEMNEKLGKSRETGTGNSGQNASNTKWGSRQKPQYYVKDGKNYSYKVAGAVAVANSNEA 549
Query: 732 SLLNQAQKELIHGLGRGGNHPFGAVRKFTE-FK--DNDNQSHVSETEGRGVLXXXXXXXX 788
SL+N+AQKELIHGLGRGGN P GAV+K + +K NQ HVS TE
Sbjct: 550 SLVNEAQKELIHGLGRGGNLPLGAVQKLADSYKGGGGGNQFHVSGTE---GRGSGGGRGK 606
Query: 789 XXXXKQTEPHQPQETQSNG-SEMEGQDHVSNNXXXXXXXXXXXXXSNHYRKDQAMKKHFS 847
+ E +Q QE QS+ SE+EG+D NN +NHYRKDQAMKKHFS
Sbjct: 607 REGGRHIEHNQHQEKQSDDVSEVEGRDQGPNNRGRGRGRGRGGGRNNHYRKDQAMKKHFS 666
Query: 848 GLGG 851
GL G
Sbjct: 667 GLSG 670