Miyakogusa Predicted Gene

Lj1g3v1720150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1720150.1 tr|D3YBD2|D3YBD2_TRIRP Transcription initiation
factor OS=Trifolium repens PE=4 SV=1,71.73,0,seg,NULL;
TAF4,Transcription initiation factor TFIID component TAF4; RST,RST
domain of plant C-termi,CUFF.27715.1
         (921 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g102840.1 | transcription initiation factor | HC | chr3:47...   387   e-107
Medtr3g102910.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC ...   359   6e-99
Medtr3g102940.1 | transcription initiation factor | HC | chr3:47...   238   3e-62
Medtr3g102950.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC ...   194   2e-49

>Medtr3g102840.1 | transcription initiation factor | HC |
           chr3:47389115-47387417 | 20130731
          Length = 311

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/302 (68%), Positives = 226/302 (74%), Gaps = 4/302 (1%)

Query: 570 SNTSGKKPSHGQKKPVEAXXXXXXXXXXXXXXXXXXLDQSIEQLNDVTAVGGVDLREEEE 629
           S T  KKP  GQKKP+EA                  L+ SI+QLNDVTAV GVDLREEEE
Sbjct: 2   SKTPLKKPPLGQKKPLEALGSSPPPPSKKQKVSS--LEPSIDQLNDVTAVSGVDLREEEE 59

Query: 630 QLFSGPREDSRVSEASRRVVQEEEESLILQKAPLQKKLTKIMAECGLKGMSNDVEKCLSL 689
           QLFSGP++DSRVSEASRRVVQEEEESLIL KAPLQ+KL +IM ECGLKGM NDVE+CLSL
Sbjct: 60  QLFSGPKDDSRVSEASRRVVQEEEESLILLKAPLQRKLIEIMTECGLKGMGNDVERCLSL 119

Query: 690 CVEERMRGLISNMIRMSKQRVDLEKMRHRTVVTSDVRQQIMAMNTKAREEWEKKQAETEK 749
           CVEERMRG+ISN+IRMSKQRVD+EK RHRTVVTSDVRQQIM MN KAREEWEKKQAETEK
Sbjct: 120 CVEERMRGVISNIIRMSKQRVDIEKTRHRTVVTSDVRQQIMTMNRKAREEWEKKQAETEK 179

Query: 750 LRKVTDVEGHSGVDGDREKDEGRNKAIKVNKEVDDKMXXXXXXXXXXXXXXXXXVLSKWQ 809
           LRK+ DVEG SGVDGD+EKDEGRNKA KVN+EVDDKM                 +LSKWQ
Sbjct: 180 LRKLNDVEGSSGVDGDKEKDEGRNKATKVNREVDDKMRTNAANVAARAAVGGDDMLSKWQ 239

Query: 810 HMAELAKQKREGGMDSSSGSQPAKDLXXXXXXXXXXXXTKDNQERGKKGPTSTQTSGAAR 869
            MAE A+QKREGG D++SGSQ  KD+            TKDNQER +KGPTS   S A  
Sbjct: 240 LMAEQARQKREGGTDTASGSQQTKDI-SRKSSPSSGRSTKDNQERERKGPTSLGNS-AVY 297

Query: 870 KF 871
           KF
Sbjct: 298 KF 299


>Medtr3g102910.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC |
           chr3:47408580-47407083 | 20130731
          Length = 418

 Score =  359 bits (922), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 195/363 (53%), Positives = 238/363 (65%), Gaps = 35/363 (9%)

Query: 165 MSNQQASVNEQSSTQTNRGKQVPFGXXXXXXXXXXXKDRALQLHTLFNKLKKDEIPKDNF 224
           M NQ+A+VNEQ S+Q NR KQVP G           +D+A++L TL  KLK+DEI KD  
Sbjct: 1   MHNQEAAVNEQPSSQINRNKQVPIGLLLPIIIPQLAEDKAIELQTLMEKLKRDEISKDQC 60

Query: 225 VRLMKGIVGEQMLRLALAKVQLQLKSNPGPPGQQHPVRMPTISSGAAKFNDPHALAQQPQ 284
           VRL+KGIV +QM+R AL +VQ Q+KSN G  GQQHP+ MPT++S  A+FNDPHA+    +
Sbjct: 61  VRLLKGIVEDQMIRKALTEVQQQIKSNTGSSGQQHPISMPTVTSIPAQFNDPHAIV---K 117

Query: 285 LHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVAPQGLKQGQLPLPSS 344
           LH RS+NAAAD SHNNSS +Q+K    Y TMDI+ KKS E DV    Q ++  QL   SS
Sbjct: 118 LHPRSMNAAADHSHNNSSVIQVKTGPTYSTMDISTKKSQEHDV----QAVEPTQLLPSSS 173

Query: 345 NAVGQETERSSLHIHGLSKQQQQHLHFPSAYGSSGGNYNPFXXXXXXXXXXLRPQPH--D 402
           N + QETE + +H  G   QQQQH+HFPS Y  SGGN+NPF          LRPQP   +
Sbjct: 174 NTICQETENTPVHTQGFYNQQQQHIHFPSPYEISGGNFNPFLGKITGSLSSLRPQPQPLN 233

Query: 403 SHMRQIPPQSIGLNHVGGATQGSFGTVKLERQNSYSDPKRMPGGSVSPAVNNTASQQNLN 462
           SH R+IP QSIGLNH+G           +E+Q+ ++DPKRM GGSVS  VNNTASQQ LN
Sbjct: 234 SHKRRIPHQSIGLNHLG-----------VEQQSLFNDPKRMRGGSVSTVVNNTASQQTLN 282

Query: 463 PWQQSNEQNSGMLSSASYVKREPNDLSTEQQYRHHLSKLHGFPSVNSAKTDQGSGANQGT 522
            WQ S                EPNDLSTEQQ++HHLSKLHG PSVNS + +QG   NQGT
Sbjct: 283 SWQSS---------------AEPNDLSTEQQHKHHLSKLHGLPSVNSGQNEQGGDVNQGT 327

Query: 523 VND 525
           + D
Sbjct: 328 IKD 330


>Medtr3g102940.1 | transcription initiation factor | HC |
           chr3:47419507-47418800 | 20130731
          Length = 208

 Score =  238 bits (606), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 154/211 (72%), Gaps = 10/211 (4%)

Query: 219 IPKDNFVRLMKGIVGEQMLRLALAKVQLQLKSNPGPPG-QQHPVRMPTISSGAAKFNDPH 277
           +PK++FVRLMKGIVG+QMLR+ALAKVQ Q K+N G  G QQ PVR+ T++S   KFNDP 
Sbjct: 1   MPKEHFVRLMKGIVGDQMLRIALAKVQQQTKTNTGSSGGQQPPVRISTVTSSGTKFNDPD 60

Query: 278 ALAQQPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVAPQGLKQG 337
           ALAQ   LHQRS NAAAD SHN SSA+Q+K+E  Y TMDI+AKK  E DV+V    ++  
Sbjct: 61  ALAQ---LHQRSWNAAADHSHNASSAIQVKSEPTYSTMDISAKKPQEHDVRV----VQSN 113

Query: 338 QLPLPSSNAVGQETERSSLHIHGLSKQQQQHLHFPSAYGSSGGNYNPFXXXXXXXXXXLR 397
           QLP  SS A+ QETERS++H+ GL+KQQQQH+HFPS YGSSGGNY+ F          LR
Sbjct: 114 QLPTSSSIAISQETERSTIHMQGLNKQQQQHIHFPSTYGSSGGNYSHFSGTITGSLSSLR 173

Query: 398 PQ--PHDSHMRQIPPQSIGLNHVGGATQGSF 426
           PQ   HD H+R+IP  +IGLNH+G   Q +F
Sbjct: 174 PQLHHHDLHIRRIPDLNIGLNHLGVIRQSTF 204


>Medtr3g102950.1 | RCD1-SRO-TAF4 (RST) plant domain protein | HC |
           chr3:47422396-47421268 | 20130731
          Length = 254

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 135/212 (63%), Gaps = 22/212 (10%)

Query: 211 FNKLKKDEIPKDNFVRLMKGIVGEQMLRLALAKVQLQL-------------KSNPGPPGQ 257
            N+  +DEIPK++FVRLMKGIVG+ MLR+ALAKVQ Q+             K+N G  GQ
Sbjct: 30  LNQEIRDEIPKEHFVRLMKGIVGDPMLRIALAKVQQQIDFNVMLRTILFLTKTNTGSSGQ 89

Query: 258 QHPVRMPTISSGAAKFNDPHALAQQPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDI 317
           Q PVRMPT++S   KFN P ALAQ   LHQRS NAAAD SHN SSA+Q+K+E +Y TMDI
Sbjct: 90  QPPVRMPTVTSSGTKFNGPDALAQ---LHQRSTNAAADHSHNASSAIQVKSEPSYSTMDI 146

Query: 318 NAKKSPELDVQVAPQGLKQGQLPLPSSNAVGQETERSSLHIHGLSKQQQQHLHFPSAYGS 377
           +AKKS E DV+V    ++  QL   SSN + QETE + +   G   QQQQH+HFP  Y  
Sbjct: 147 SAKKSQEHDVRV----VEPTQLLPSSSNTISQETENTPVCTQGFYNQQQQHIHFPLPYEI 202

Query: 378 SGGNYNPFXXXXXXXXXXLRPQPHDSHMRQIP 409
           SG N+NPF          LRPQ  D  M Q P
Sbjct: 203 SGCNFNPFLGTITGSLSSLRPQ--DVEMFQDP 232



 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 28/34 (82%)

Query: 1  MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDI 34
          MDPSIV LL DDEDET+ SG DVE FQA LN++I
Sbjct: 1  MDPSIVILLNDDEDETVLSGEDVEMFQAPLNQEI 34