Miyakogusa Predicted Gene

Lj1g3v1698930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1698930.1 Non Characterized Hit- tr|B9R740|B9R740_RICCO
Mads box protein, putative OS=Ricinus communis GN=RCOM,34.24,4e-16,
,gene.g31837.t1.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g102570.1 | MADS-box transcription factor family protein |...   207   4e-54
Medtr5g061740.1 | MADS-box transcription factor | HC | chr5:2566...    49   2e-06
Medtr4g084740.1 | MADS-box transcription factor | HC | chr4:3302...    47   6e-06

>Medtr3g102570.1 | MADS-box transcription factor family protein | HC
           | chr3:47271241-47268844 | 20130731
          Length = 318

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/234 (50%), Positives = 141/234 (60%), Gaps = 59/234 (25%)

Query: 1   MFSPSGRACLFSGNRSIEEI---------------------------------------- 20
           MFSPSGRA LFSGNRSIEEI                                        
Sbjct: 47  MFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPS 106

Query: 21  ----------LERYINLPESE------RGRVFEGDPSEITTLCEAEYREKVLQETLKQVQ 64
                     ++R I + +S+      R R+FEGDPSEITTLCEAEYRE+VLQETLKQVQ
Sbjct: 107 PTITDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQ 166

Query: 65  LRKVHLAKIVD--GFVSRTS-NTLDWFPQGDPHVHIMNLANAYDPAPLSDQQSISNVVDM 121
           LRKVHL K VD  GF++ T+ N L WF QGD +  I+N ANAY+P+PLSD QS+S VVDM
Sbjct: 167 LRKVHLTKTVDVDGFIAGTTENALGWFSQGDTNDQILNFANAYNPSPLSDHQSLSTVVDM 226

Query: 122 VTPTSTLLYTTNIDHGAQMNPGNRVVAGINNTLHPQFEPVIDFNSSSWGHLHHL 175
           VTPTSTLL + N+DH  Q++P +   A I+NTL  QF  V+D + SSW HLH L
Sbjct: 227 VTPTSTLLNSANVDHNCQISPRDAAEADISNTLSTQFGQVMDTSLSSWEHLHQL 280


>Medtr5g061740.1 | MADS-box transcription factor | HC |
          chr5:25660525-25654991 | 20130731
          Length = 331

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 1  MFSPSGRACLFSGNRSIEEILERYINLPESERGRVFE-GDPSEITTLCEAEYREKVLQE 58
          MFSPS R   FSG R IE++L RYINLP+ ER       +P     +   EY  ++LQ+
Sbjct: 31 MFSPSKRLSHFSGKRRIEDVLSRYINLPDQERDNAVSFPEPPYRRGIQNKEYFLRILQQ 89


>Medtr4g084740.1 | MADS-box transcription factor | HC |
           chr4:33021891-33024814 | 20130731
          Length = 334

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 1   MFSPSGRACLFSGNRSIEEILERYINLPESERGRVFEGDPSEITTL-CEAEYREKVLQE 58
           MFSPS R   FSG R IE++L RYIN+P+ ER            +L C  +Y  ++LQ+
Sbjct: 47  MFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRSLYCILQYLLRILQQ 105