Miyakogusa Predicted Gene

Lj1g3v1697890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1697890.1 Non Characterized Hit- tr|I1MXK0|I1MXK0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26164
PE,48.31,0.000000000004, ,CUFF.27688.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g018740.1 | transmembrane protein, putative | LC | chr1:54...    46   6e-06

>Medtr1g018740.1 | transmembrane protein, putative | LC |
          chr1:5461352-5461098 | 20130731
          Length = 84

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 10/83 (12%)

Query: 5  SLWIVLVAMMFLLSSQVCFVHSRVLRSKSSKE---------TVSSLGMTSFDVSSKDSIT 55
          SLWIVL   M + S +   VH RVLR ++            T  S+GMT+F VSS +S  
Sbjct: 3  SLWIVLFITMVVASCEFSLVHGRVLRPEAQNAQIGDGCEGTTEGSVGMTTFSVSSNNSSF 62

Query: 56 RRASKLSLTHILASGPSKKGRGH 78
            +++ SL   L SGPSK+G+GH
Sbjct: 63 HDSAR-SLAFRLTSGPSKRGKGH 84