Miyakogusa Predicted Gene

Lj1g3v1686750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1686750.1 tr|G7LG21|G7LG21_MEDTR Protein DCL OS=Medicago
truncatula GN=MTR_8g039170 PE=4 SV=1,39.47,6e-19,seg,NULL; no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function D,CUFF.27678.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 | 20...   191   5e-49
Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 | 20...   112   2e-25
Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 | 20...   112   2e-25
Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 | 20...   111   5e-25
Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 | 20...   110   1e-24
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...    82   2e-16
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    56   2e-08

>Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 |
           20130731
          Length = 202

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/184 (52%), Positives = 119/184 (64%), Gaps = 14/184 (7%)

Query: 16  CFQNH---TAGAVAARHRKWFSAATNSPSNEAEAEE-----------KVSPSTTFNLREN 61
           CF N+   T   V ARHR W SAA  +P +E   ++            V PS+ F L + 
Sbjct: 16  CFHNYKHFTVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLNRRDVFPSSNFRLEDE 75

Query: 62  DPDSRKWXXXXXXXXXXXXXXVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESE 121
           + D RKW              ++L K+ILHS +YM+G  L +E+EK +VEKLLAYHP SE
Sbjct: 76  ESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSE 135

Query: 122 DKIGCGIESIMVDRHPEFRHSKRLFVVRTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRK 181
           DKIGCG+ESIMVDRHP+FRHS+ LFVVRTDG WIDFSY  CL+ YI+ KYP HAERFIR+
Sbjct: 136 DKIGCGLESIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIRE 195

Query: 182 HYHR 185
           H  R
Sbjct: 196 HLKR 199


>Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 |
           20130731
          Length = 199

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 16  CFQNH---TAGAVAARHRKWFSAATNSPSNEAEAEE-----------KVSPSTTFNLREN 61
           CF N+   T   V ARHR W SAA  +P +E   ++            V PS+ F L + 
Sbjct: 16  CFHNYKHFTVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLNRRDVFPSSNFRLEDE 75

Query: 62  DPDSRKWXXXXXXXXXXXXXXVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESE 121
           + D RKW              ++L K+ILHS +YM+G  L +E+EK +VEKLLAYHP SE
Sbjct: 76  ESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSE 135

Query: 122 DKIGCGIESIMVDRHPE 138
           DKIGCG+ESIM+D + E
Sbjct: 136 DKIGCGLESIMIDSNYE 152


>Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 |
           20130731
          Length = 199

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 14/137 (10%)

Query: 16  CFQNH---TAGAVAARHRKWFSAATNSPSNEAEAEE-----------KVSPSTTFNLREN 61
           CF N+   T   V ARHR W SAA  +P +E   ++            V PS+ F L + 
Sbjct: 16  CFHNYKHFTVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLNRRDVFPSSNFRLEDE 75

Query: 62  DPDSRKWXXXXXXXXXXXXXXVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESE 121
           + D RKW              ++L K+ILHS +YM+G  L +E+EK +VEKLLAYHP SE
Sbjct: 76  ESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSE 135

Query: 122 DKIGCGIESIMVDRHPE 138
           DKIGCG+ESIM+D + E
Sbjct: 136 DKIGCGLESIMIDSNYE 152


>Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 |
           20130731
          Length = 224

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 68/101 (67%)

Query: 83  VLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHS 142
           V   + ILHS +Y NG  L  E EK IVEKLL +HPES+ KIGCGI+ I V  HP F  S
Sbjct: 117 VGFVRTILHSGQYENGDRLSPEHEKTIVEKLLPFHPESQKKIGCGIDYITVGYHPNFDRS 176

Query: 143 KRLFVVRTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRKHY 183
           + +F+VR DG  +DFSY  C++  IR  YP++A+ FI +H+
Sbjct: 177 RCMFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHF 217


>Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 |
           20130731
          Length = 167

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 14/135 (10%)

Query: 16  CFQNH---TAGAVAARHRKWFSAATNSPSNEAEAEE-----------KVSPSTTFNLREN 61
           CF N+   T   V ARHR W SAA  +P +E   ++            V PS+ F L + 
Sbjct: 16  CFHNYKHFTVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLNRRDVFPSSNFRLEDE 75

Query: 62  DPDSRKWXXXXXXXXXXXXXXVLLAKDILHSPRYMNGQILDMEEEKAIVEKLLAYHPESE 121
           + D RKW              ++L K+ILHS +YM+G  L +E+EK +VEKLLAYHP SE
Sbjct: 76  ESDYRKWKDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSE 135

Query: 122 DKIGCGIESIMVDRH 136
           DKIGCG+ESIMV  +
Sbjct: 136 DKIGCGLESIMVSTY 150


>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
            chr8:14459096-14475944 | 20130731
          Length = 2010

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 60/97 (61%)

Query: 89   ILHSPRYMNGQILDMEEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHSKRLFVV 148
            I+    Y +G  L  E++K ++E +  +HP+ E K+G G++ +MV +H  F+ S+ L+VV
Sbjct: 1839 IMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVV 1898

Query: 149  RTDGVWIDFSYNWCLQSYIRYKYPIHAERFIRKHYHR 185
              DG   DFSY  CL++ +R KYP  AE F  K++ +
Sbjct: 1899 LKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRK 1935


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%)

Query: 104  EEEKAIVEKLLAYHPESEDKIGCGIESIMVDRHPEFRHSKRLFVVRTDGVWIDFSYNWCL 163
            E +K  + K+L +HP  ++K G G ++I V  HPEF  S+  F++R DG   DFSY  C+
Sbjct: 1386 ETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCI 1445