Miyakogusa Predicted Gene

Lj1g3v1686700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1686700.1 tr|Q2HTQ3|Q2HTQ3_MEDTR Cysteine proteinase
OS=Medicago truncatula GN=MTR_1g018840 PE=3
SV=1,65.71,0.0000000000002,seg,NULL,CUFF.27673.1
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g018840.1 | papain family cysteine protease | HC | chr1:55...    77   3e-15
Medtr1g018840.2 | papain family cysteine protease | HC | chr1:55...    77   3e-15
Medtr1g107550.1 | papain family cysteine protease | HC | chr1:48...    77   5e-15
Medtr3g102220.1 | papain family cysteine protease | HC | chr3:47...    65   1e-11

>Medtr1g018840.1 | papain family cysteine protease | HC |
           chr1:5550841-5545981 | 20130731
          Length = 474

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           +ERNL ++ AGKCGIA+  SYPIK GQN                 VC+SYYSCA G+TCC
Sbjct: 339 LERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPP-SVCDSYYSCAEGSTCC 397

Query: 61  CVYQFGKSCF 70
           C+Y++G+SCF
Sbjct: 398 CIYEYGRSCF 407


>Medtr1g018840.2 | papain family cysteine protease | HC |
           chr1:5550773-5546467 | 20130731
          Length = 457

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           +ERNL ++ AGKCGIA+  SYPIK GQN                 VC+SYYSCA G+TCC
Sbjct: 339 LERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPP-SVCDSYYSCAEGSTCC 397

Query: 61  CVYQFGKSCF 70
           C+Y++G+SCF
Sbjct: 398 CIYEYGRSCF 407


>Medtr1g107550.1 | papain family cysteine protease | HC |
           chr1:48881273-48878969 | 20130731
          Length = 473

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           MERNL T   GKCGIAM ASYPIKKGQN                 VC+ YYSC+ GTTCC
Sbjct: 333 MERNLLTKETGKCGIAMEASYPIKKGQNPPNPGPSPPSPVQPST-VCDEYYSCSAGTTCC 391

Query: 61  CVYQFGKSCF 70
           C++++G  CF
Sbjct: 392 CLFEYGNFCF 401


>Medtr3g102220.1 | papain family cysteine protease | HC |
           chr3:47106424-47111900 | 20130731
          Length = 474

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 1   MERNLKTNSAGKCGIAMMASYPIKKGQNXXXXXXXXXXXXXXXXHVCNSYYSCAPGTTCC 60
           MERNL  + AGKCGI M +SYPIKKGQ                 +VC+ Y+SCA  TTCC
Sbjct: 339 MERNLAASVAGKCGIVMQSSYPIKKGQ-NPPNPGPSPPSPVNPPNVCSRYHSCASSTTCC 397

Query: 61  CVYQFGKSCF 70
           CV+  GK CF
Sbjct: 398 CVFGIGKLCF 407