Miyakogusa Predicted Gene
- Lj1g3v1650160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1650160.1 Non Characterized Hit- tr|K3YP74|K3YP74_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016066,41.88,4e-19,DUF3223,Protein of unknown function DUF3223;
no description,Copper amine oxidase, N2/N3-terminal; se,CUFF.27654.1
(225 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 | 20... 253 7e-68
Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 | 20... 124 9e-29
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590... 110 1e-24
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076... 74 8e-14
Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 | 20... 65 5e-11
Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 | 20... 65 5e-11
Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 | 20... 64 1e-10
Medtr3g435580.1 | DUF3223 family protein | HC | chr3:11684483-11... 48 7e-06
>Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 |
20130731
Length = 224
Score = 253 bits (647), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 138/216 (63%), Positives = 153/216 (70%), Gaps = 9/216 (4%)
Query: 15 HIHSLGNPSSSFRSPPLILSFRFYWSASLP--LHTRLSALKXXXXXXXXXXXXNLLRKPL 72
H HS N S SFRS LILS FY S + P LH+R S+ NL KP+
Sbjct: 13 HTHSFKN-SLSFRSSRLILSIPFY-SKNKPQLLHSRFSSSLKVASSSSSEAQNNLQGKPV 70
Query: 73 ITPRKDPAGVLEE---HGYAYXXXXXXXXXXXXXXXXXXQILEDTVPLVGFVRTILHSGH 129
++ K G++EE + Y QILEDTVPLVGFVRTILHSG
Sbjct: 71 LSQGK--GGIVEEQSSYSYQQEEEEDSTDEEDKWVDWEDQILEDTVPLVGFVRTILHSGQ 128
Query: 130 YESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCLFIVRKDGEL 189
YE+GDRLSPEHEKTI+EKLLPFHPES+KKIGCGIDYIT+GYHP FDRSRC+FIVR+DGEL
Sbjct: 129 YENGDRLSPEHEKTIVEKLLPFHPESQKKIGCGIDYITVGYHPNFDRSRCMFIVRQDGEL 188
Query: 190 VDFSYWKCIKGLIRKNYPLYADSFILRHFRKRSRNL 225
VDFSYWKCIKGLIRKNYPLYADSFILRHFR RSRNL
Sbjct: 189 VDFSYWKCIKGLIRKNYPLYADSFILRHFRNRSRNL 224
>Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 |
20130731
Length = 202
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+I D P++ + ILHS Y G L+ E EKT++EKLL +HP SE KIGCG++ I +
Sbjct: 88 EIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLESIMV 147
Query: 169 GYHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRS 222
HPQF SRCLF+VR DG +DFSY KC++ I+K YP +A+ FI H ++ S
Sbjct: 148 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIREHLKRGS 201
>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
chr8:14459096-14475944 | 20130731
Length = 2010
Score = 110 bits (274), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 72/111 (64%)
Query: 110 ILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITIG 169
I++D P+V +R I+ Y GD L+ E +K +LE + HP+ E K+G G+D++ +
Sbjct: 1825 IMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVS 1884
Query: 170 YHPQFDRSRCLFIVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 220
H F SRCL++V KDG+ DFSY KC++ L+RK YP A+SF ++FRK
Sbjct: 1885 KHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRK 1935
>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
chr5:3060764-3075383 | 20130731
Length = 1519
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 121 VRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCL 180
R IL+ Y+ + LS E +K + K+L FHP ++K G G I +G+HP+F SRC
Sbjct: 1371 ARVILN--KYQIDETLS-ETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCF 1427
Query: 181 FIVRKDGELVDFSYWKCIKGLI 202
FI+RKDG + DFSY KCI G +
Sbjct: 1428 FIIRKDGSVEDFSYRKCILGAL 1449
>Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 |
20130731
Length = 199
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+I D P++ + ILHS Y G L+ E EKT++EKLL +HP SE KIGCG++ I I
Sbjct: 88 EIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLESIMI 147
Query: 169 --GYHPQFDRSRC 179
Y Q +RC
Sbjct: 148 DSNYEAQ---TRC 157
>Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 |
20130731
Length = 199
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+I D P++ + ILHS Y G L+ E EKT++EKLL +HP SE KIGCG++ I I
Sbjct: 88 EIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLESIMI 147
Query: 169 --GYHPQFDRSRC 179
Y Q +RC
Sbjct: 148 DSNYEAQ---TRC 157
>Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 |
20130731
Length = 167
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 109 QILEDTVPLVGFVRTILHSGHYESGDRLSPEHEKTILEKLLPFHPESEKKIGCGIDYITI 168
+I D P++ + ILHS Y G L+ E EKT++EKLL +HP SE KIGCG++ I +
Sbjct: 88 EIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLESIMV 147
Query: 169 G 169
Sbjct: 148 S 148
>Medtr3g435580.1 | DUF3223 family protein | HC |
chr3:11684483-11682018 | 20130731
Length = 235
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 144 ILEKLLPFHPESEKKIGCGIDYITIGYHPQFDRSRCLFIVRKDGELVDFSYWKCI 198
+LE L H E ++KIG GI + HP+++ SRC F++R+D DFS+ KC+
Sbjct: 126 LLELLKNGHAEPDRKIGVGICAFQVRDHPRYN-SRCYFLIREDDTADDFSFRKCV 179