Miyakogusa Predicted Gene
- Lj1g3v1648780.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1648780.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.49,0.0000000004,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.2
(266 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 384 e-107
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 361 e-100
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 296 2e-80
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 258 4e-69
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 249 2e-66
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 244 5e-65
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 214 6e-56
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 211 5e-55
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 146 2e-35
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 146 2e-35
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 145 3e-35
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 104 1e-22
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 103 2e-22
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 103 2e-22
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 103 2e-22
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 97 1e-20
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 86 5e-17
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 85 7e-17
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 81 1e-15
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 79 7e-15
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 77 1e-14
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 74 1e-13
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 72 5e-13
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 71 1e-12
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 71 1e-12
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 70 3e-12
Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35... 68 1e-11
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 1e-11
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 1e-11
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 67 1e-11
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 9e-11
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 9e-11
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 1e-10
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 60 2e-09
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 60 2e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 59 6e-09
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 59 6e-09
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 7e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 9e-09
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 58 1e-08
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 57 2e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 57 2e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 56 4e-08
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 56 4e-08
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 56 4e-08
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 56 4e-08
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 56 4e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 5e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 8e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 55 9e-08
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 55 9e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 55 9e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like pro... 53 3e-07
Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like pro... 53 3e-07
Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like pro... 53 3e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like pro... 53 3e-07
Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like pro... 53 3e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 52 4e-07
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 7e-07
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 8e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 9e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 9e-07
Medtr8g070490.1 | RNA recognition motif (RRM) containing protein... 51 1e-06
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 1e-06
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 49 5e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 8e-06
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 9e-06
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 9e-06
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 9e-06
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/267 (73%), Positives = 207/267 (77%), Gaps = 4/267 (1%)
Query: 1 MLMPNTEQPFRLNWATFSTGD-KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
MLMPNTEQPFRLNWATFSTGD KRSDNVPDLSIFVGDLA DVTDTML ETF++KYPSVKA
Sbjct: 157 MLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKA 216
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXX 119
AKVVFDANTGRSKGYGFVRFGDD ERS+A+NEMNGV+CSSR MRIGAATPRK
Sbjct: 217 AKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGG 276
Query: 120 XXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 179
+ +S NTTIFVGGLDP+ AEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN
Sbjct: 277 QSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 336
Query: 180 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPWNXXXXXXXXXXXXXXAFP 239
RNNAEEALQKLNGTT+GKQTVRLSWGRNPANK FR +FGSPWN
Sbjct: 337 RNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAM 396
Query: 240 PSPHDPSTFXXXXXXXXXXXXHQQQVS 266
P P+D S + HQQQVS
Sbjct: 397 PHPYDQSMY---AAAYPMYGGHQQQVS 420
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+++VGDL + + LH FA+ + + KV+ + T +++GYGFV F + +
Sbjct: 94 TLWVGDLHHWMDENYLHRCFAST-GEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNT---TIFVGGLDPN 145
G+ + +P R+ AT S+N +IFVG L +
Sbjct: 153 TYAGMLMPNTEQPFRLNWAT---------------FSTGDHKRSDNVPDLSIFVGDLAAD 197
Query: 146 VNAEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQ 198
V L + FS +Y + + K+ KG GFV+F + +AL ++NG +
Sbjct: 198 VTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSR 257
Query: 199 TVRL 202
+R+
Sbjct: 258 AMRI 261
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 197/266 (74%), Gaps = 1/266 (0%)
Query: 1 MLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAA 60
+LMPN +Q FRLNWATFSTGDK SDNV DLSIFVGDLA DVTD++LHETF++ YPSVKAA
Sbjct: 161 ILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAA 220
Query: 61 KVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXX 120
KVV+DANTGRSKGYGFVRFGD++ERSQAM +MNGVYCSSRPMRIGAATPRK
Sbjct: 221 KVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQ 280
Query: 121 XXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 180
EA+S NTTIFVGGLD NV EDL+Q FSQYGEI SVKIPVGKGCGFVQFANR
Sbjct: 281 SNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANR 340
Query: 181 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPWNXXXXXXXXXXXXXXAFPP 240
NNAEEALQKLNGT IGKQTVRLSWGRNPA K FR D GS W A P
Sbjct: 341 NNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLDVGS-WAGPYFPSPIYDGYGYAMPS 399
Query: 241 SPHDPSTFXXXXXXXXXXXXHQQQVS 266
HDPS + H QQVS
Sbjct: 400 PHHDPSMYPLAYGGYPIYGGHSQQVS 425
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + ++ LH FA+ + + KV+ + ++G S+GYGF F + +
Sbjct: 98 TLWIGDLHSWMDESYLHRCFAST-GEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ 156
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT---IFVGGLDPN 145
G+ + + R+ AT + S+N T IFVG L +
Sbjct: 157 NYAGILMPNADQAFRLNWAT----------------FSTGDKGSDNVTDLSIFVGDLAAD 200
Query: 146 VNAEDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTT---- 194
V L + F S Y + + K+ KG GFV+F + + +A+ ++NG
Sbjct: 201 VTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSR 260
Query: 195 ---IGKQTVRLSWGRNPANK 211
IG T R S G P +
Sbjct: 261 PMRIGAATPRKSSGHQPGGQ 280
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/235 (62%), Positives = 173/235 (73%), Gaps = 20/235 (8%)
Query: 2 LMPNTEQPFRLNWATFST----GDKRS-DNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 56
+MPNT+Q FRLNWATFS G++RS + DLS+FVGDLA DVTD ML ETFA+K+ S
Sbjct: 181 MMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSS 240
Query: 57 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK----- 111
+K AKVV D+NTGRSKGYGFVRFGD++ER++AM EMNGVYCSSRPMR+G ATP+K
Sbjct: 241 IKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNP 300
Query: 112 ----------XXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
E +SNNTTIFVGGLD +++ EDLRQPF Q+G++
Sbjct: 301 QQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 360
Query: 162 VSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGD 216
+SVKIPVGKGCGFVQ A+R NAEEA+Q LNGT IGKQTVRLSWGR+P NK R D
Sbjct: 361 ISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHGRND 415
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+I++GDL + +T LH FA+ V +AKV+ + TG+S+GYGFV F + +
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHT-GEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + + R+ AT EA S + ++FVG L +V
Sbjct: 176 NFNGTMMPNTDQAFRLNWAT-------FSAAGGGGERRSSEATS-DLSVFVGDLAIDVTD 227
Query: 149 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L++ F S++ I K+ + KG GFV+F + + A+ ++NG + +R
Sbjct: 228 AMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMR 287
Query: 202 L 202
+
Sbjct: 288 V 288
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/252 (53%), Positives = 167/252 (66%), Gaps = 6/252 (2%)
Query: 2 LMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAK 61
+MPN Q FRLNWATFS+G+KR D+ PD +IFVGDLA DV+D L E F +Y SVK AK
Sbjct: 139 IMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAK 198
Query: 62 VVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXX 121
VV D TGR+KGYGFVRF D++E+ +AM EM GV CS+RPMRIG A+ +
Sbjct: 199 VVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASY 258
Query: 122 XXXXXXXEAES--NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFAN 179
+ E+ NNTTIFVG LDPNV E L+Q F+QYGE+V VKIP GK CGFVQFA+
Sbjct: 259 QNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFAD 318
Query: 180 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGDFGSPWNXXXXXXXXXXXXXXAF- 238
R++AEEAL+ LNGT +G Q VRLSWGR+PANK + D + WN +
Sbjct: 319 RSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQD-PNQWNGSSSYFGGYAQGYENYA 377
Query: 239 --PPSPHDPSTF 248
PP+ DP+ +
Sbjct: 378 YAPPAGQDPNMY 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ F++ V + KV+ + T +S+GYGF+ F + +
Sbjct: 75 TLWIGDLQYWMDENYLYNCFSHT-GEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQ 133
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + R+ AT +S + TIFVG L +V+
Sbjct: 134 TFNGTIMPNGGQNFRLNWAT-------------FSSGEKRHDDSPDYTIFVGDLAADVSD 180
Query: 149 EDLRQPF-SQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L + F ++Y + K+ + KG GFV+FA+ + A+ ++ G + +R
Sbjct: 181 HHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMR 240
Query: 202 L 202
+
Sbjct: 241 I 241
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/218 (58%), Positives = 153/218 (70%), Gaps = 3/218 (1%)
Query: 2 LMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
+MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +L ETF +Y SVK
Sbjct: 125 IMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKG 184
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXX 119
AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG AT +
Sbjct: 185 AKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPK 244
Query: 120 XXXX-XXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFA 178
E + NNTTIFVG LDPNV + LRQ F+QYGE+V VKIP GK CGFVQF+
Sbjct: 245 ASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFS 304
Query: 179 NRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPFRGD 216
+R+ AEEA++ LNGT +G Q VRLSWGR P+NK + D
Sbjct: 305 DRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQD 342
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ F N + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + R+ AT + + + TIFVG L +V
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 149 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 202 L--SWGRNPA 209
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/225 (54%), Positives = 150/225 (66%), Gaps = 21/225 (9%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
MP TEQ FRLNWA+F G++R D PD SIFVGDLA DVTD +L ETF Y SV+ AKV
Sbjct: 81 MPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKV 140
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
V D NTGRSKGYGFV+F D++ER++AM+EMNGVYCS+RPMRI AATP+K
Sbjct: 141 VTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAA 200
Query: 123 XXXXXX---------------------EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
E + NNTTI+VG LD NV+ E+L+Q F Q+GEI
Sbjct: 201 VVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEI 260
Query: 162 VSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
VSVK+ GK CGFVQF R +AEEA+QK+ G +G+Q +R+SWGR
Sbjct: 261 VSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGR 305
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRNNAEEALQK 189
T+++G L V+ L FS GE++S+KI K G GF++F + + AE LQ
Sbjct: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
Query: 190 LNGTTI--GKQTVRLSWG 205
NGT + +QT RL+W
Sbjct: 76 YNGTQMPGTEQTFRLNWA 93
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/138 (76%), Positives = 114/138 (82%), Gaps = 1/138 (0%)
Query: 1 MLMPNTEQPFRLNWATFSTGD-KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
MLMPNTEQPFRLNWATFSTGD KRSDNVPDLSIFVGDLA DVTDTML ETF++KYPSVKA
Sbjct: 157 MLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKA 216
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXX 119
AKVVFDANTGRSKGYGFVRFGDD ERS+A+NEMNGV+CSSR MRIGAATPRK
Sbjct: 217 AKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGG 276
Query: 120 XXXXXXXXXEAESNNTTI 137
+ +S NTT+
Sbjct: 277 QSNGTPSQSDTDSTNTTV 294
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+++VGDL + + LH FA+ + + KV+ + T +++GYGFV F + +
Sbjct: 94 TLWVGDLHHWMDENYLHRCFAST-GEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNT---TIFVGGLDPN 145
G+ + +P R+ AT S+N +IFVG L +
Sbjct: 153 TYAGMLMPNTEQPFRLNWAT---------------FSTGDHKRSDNVPDLSIFVGDLAAD 197
Query: 146 VNAEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQ 198
V L + FS +Y + + K+ KG GFV+F + +AL ++NG +
Sbjct: 198 VTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSR 257
Query: 199 TVRL 202
+R+
Sbjct: 258 AMRI 261
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/142 (71%), Positives = 113/142 (79%)
Query: 1 MLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAA 60
+LMPN +Q FRLNWATFSTGDK SDNV DLSIFVGDLA DVTD++LHETF++ YPSVKAA
Sbjct: 161 ILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAA 220
Query: 61 KVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXX 120
KVV+DANTGRSKGYGFVRFGD++ERSQAM +MNGVYCSSRPMRIGAATPRK
Sbjct: 221 KVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQ 280
Query: 121 XXXXXXXXEAESNNTTIFVGGL 142
EA+S NTT+ L
Sbjct: 281 SNGTSSQSEADSTNTTVSFSAL 302
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + ++ LH FA+ + + KV+ + ++G S+GYGF F + +
Sbjct: 98 TLWIGDLHSWMDESYLHRCFAST-GEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ 156
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT---IFVGGLDPN 145
G+ + + R+ AT + S+N T IFVG L +
Sbjct: 157 NYAGILMPNADQAFRLNWAT----------------FSTGDKGSDNVTDLSIFVGDLAAD 200
Query: 146 VNAEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTT---- 194
V L + FS Y + + K+ KG GFV+F + + +A+ ++NG
Sbjct: 201 VTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSR 260
Query: 195 ---IGKQTVRLSWGRNPANK 211
IG T R S G P +
Sbjct: 261 PMRIGAATPRKSSGHQPGGQ 280
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 2/109 (1%)
Query: 2 LMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
+MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +L ETF +Y SVK
Sbjct: 125 IMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKG 184
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 108
AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG AT
Sbjct: 185 AKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ F N + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + R+ AT + + + TIFVG L +V
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 149 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 202 L--SWGRNPA 209
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 2/109 (1%)
Query: 2 LMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
+MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +L ETF +Y SVK
Sbjct: 125 IMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKG 184
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 108
AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG AT
Sbjct: 185 AKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ F N + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + R+ AT + + + TIFVG L +V
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 149 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 202 L--SWGRNPA 209
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 2/109 (1%)
Query: 2 LMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKA 59
+MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +L ETF +Y SVK
Sbjct: 125 IMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKG 184
Query: 60 AKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 108
AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG AT
Sbjct: 185 AKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++++GDL + + L+ F N + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 91 EMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
NG + R+ AT + + + TIFVG L +V
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 149 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 202 L--SWGRNPA 209
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
Q ++NWA T +R D IFVGDL+ +VTD L+ F+ Y S A+V++D
Sbjct: 111 QSIKVNWAY--TRGQREDTSGHFHIFVGDLSPEVTDATLYACFS-AYSSCSDARVMWDQK 167
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP------RKXXXXXXXXXX 121
TGRS+G+GFV F + E A+N++ G + SR +R AT
Sbjct: 168 TGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVE 227
Query: 122 XXXXXXXEAES-----------NNTTIFVGGLDPNVNAEDLRQPFSQY--GEIVSVKIPV 168
EA+ TT++VG L P V + DL F G I V++
Sbjct: 228 LTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQR 287
Query: 169 GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
KG GFV+++ A A+Q N + + ++ SWG P
Sbjct: 288 DKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKP 327
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ V++ +L E F++ +++ K++ + YGFV + D + + A+
Sbjct: 47 SVYVGNIHPQVSEPLLQELFSSA-GALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIV 101
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +++ A R E S + IFVG L P V
Sbjct: 102 TLNGRNIFGQSIKVNWAYTR---------------GQREDTSGHFHIFVGDLSPEVTDAT 146
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ +G GFV F N+ A+ A+ L G +G + +R +W
Sbjct: 147 LYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNW 206
Query: 205 GRNPAN 210
AN
Sbjct: 207 ATKGAN 212
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
Q ++NWA ++ R D ++FVGDL+ +VTD L F+ Y + A+V++D
Sbjct: 109 QALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFACFS-VYTTCSDARVMWDHK 165
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP---------------RKX 112
TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 166 TGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAV 225
Query: 113 XXXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGEIV--SVKIP 167
+A NN TT++VG L +V +L F G V V++
Sbjct: 226 VLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ 285
Query: 168 VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
GKG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 286 SGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 326
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ +VTD +L E F + P + K++ + YGFV + D + A+
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 99
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++G + +++ A E S + +FVG L P V
Sbjct: 100 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 144
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 145 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 204
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
Q ++NWA ++ R D ++FVGDL+ +VTD L F+ Y + A+V++D
Sbjct: 125 QALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFACFS-VYTTCSDARVMWDHK 181
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP---------------RKX 112
TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 182 TGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAV 241
Query: 113 XXXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGEIV--SVKIP 167
+A NN TT++VG L +V +L F G V V++
Sbjct: 242 VLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ 301
Query: 168 VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
GKG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 302 SGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ +VTD +L E F + P + K++ + YGFV + D + A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++G + +++ A E S + +FVG L P V
Sbjct: 116 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 160
Query: 151 LRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 161 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 220
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
Q ++NWA ++ R D ++FVGDL+ +VTD L F+ Y + A+V++D
Sbjct: 125 QALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFACFS-VYTTCSDARVMWDHK 181
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP---------------RKX 112
TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 182 TGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAV 241
Query: 113 XXXXXXXXXXXXXXXXEAESNN---TTIFVGGLDPNVNAEDLRQPFSQYGEIV--SVKIP 167
+A NN TT++VG L +V +L F G V V++
Sbjct: 242 VLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ 301
Query: 168 VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 208
GKG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 302 SGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ +VTD +L E F + P + K++ + YGFV + D + A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++G + +++ A E S + +FVG L P V
Sbjct: 116 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 160
Query: 151 LRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 161 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 220
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
QP ++NWA +++G +R D +IFVGDL+ +VTD L F+ Y S A+V++D
Sbjct: 127 QPIKVNWA-YASG-QREDTSGHYNIFVGDLSPEVTDATLFACFS-VYQSCSDARVMWDQK 183
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP---------RKXXXXXXX 118
TGRS+G+GFV F + A+N++ G + SR +R AT
Sbjct: 184 TGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVE 243
Query: 119 XXXXXXXXXXEAESNN--------TTIFVGGLDPNVNAEDLRQPFSQYGE--IVSVKIPV 168
E SN+ TT++VG L DL + F G I V++
Sbjct: 244 LTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQR 303
Query: 169 GKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 208
KG GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 304 DKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKP 344
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VG++ VT+ +L E FA P V+ K+ + YGF+ + D + A+
Sbjct: 63 SVYVGNVHTQVTEPLLQEVFAGTGP-VEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 117
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + +P+++ A E S + IFVG L P V
Sbjct: 118 TLNGRHLFGQPIKVNWA---------------YASGQREDTSGHYNIFVGDLSPEVTDAT 162
Query: 151 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L FS Y ++ +G GFV F ++ +A+ A+ L G +G + +R +W
Sbjct: 163 LFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 222
Query: 205 GRNPA 209
A
Sbjct: 223 ATKGA 227
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL DVTD+ L++ F N+ V + ++ D + +S GYG+V F + ++ ++AM+
Sbjct: 25 SLYVGDLDHDVTDSQLYDLF-NQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N +++P+RI +S IF+ LD ++ +
Sbjct: 84 VLNFTPLNNKPIRI----------------MYSHRDPSVRKSGAANIFIKNLDRAIDHKA 127
Query: 151 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L FS +G I+S KI + KG GFVQF N +A+ A+ KLNG + + V
Sbjct: 128 LYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPV 182
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +L+ VTD L TF +Y ++ +A V+ D + G+SK +GFV F + + ++A+
Sbjct: 205 VYVKNLSESVTDDDLKNTFG-EYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEA 262
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG + +G A + + +++ LD +V E L
Sbjct: 263 LNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKL 322
Query: 152 RQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+ FS++G + S KI + +G GFV F+ A AL ++NG + + + ++
Sbjct: 323 SELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA--- 379
Query: 207 NPANK 211
PA K
Sbjct: 380 -PAQK 383
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 4 PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 63
P +P R+ ++ ++S +IF+ +L + L++TF+ + ++ + K+
Sbjct: 89 PLNNKPIRIMYSHRDPSVRKSGAA---NIFIKNLDRAIDHKALYDTFS-IFGNILSCKIA 144
Query: 64 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 123
DA +G SKGYGFV+F ++ A++++NG+ + +P+ +G ++
Sbjct: 145 MDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQ----------DR 193
Query: 124 XXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFA 178
A+ NN ++V L +V +DL+ F +YG I S + K GFV F
Sbjct: 194 DNALSNAKFNN--VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFE 251
Query: 179 NRNNAEEALQKLNG 192
N + A EA++ LNG
Sbjct: 252 NADAAAEAVEALNG 265
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL +VTD+ L++ F N+ V + +V D T RS GYG+V + + + ++A++
Sbjct: 35 SLYVGDLDMNVTDSQLYDLF-NQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N ++RP+RI +S IF+ LD ++ +
Sbjct: 94 VLNFTPLNNRPIRI----------------MYSHRDPSIRKSGQGNIFIKNLDKAIDHKA 137
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L FS +G I+S K+ V KG GFVQF A++A++KLNG + + V
Sbjct: 138 LHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQV 192
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 9 PFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANT 68
PF STGD+ N ++FV +L+ TD L +TF ++ ++ +A V+ D +
Sbjct: 196 PFLRKQERESTGDRAKFN----NVFVKNLSESTTDDELKKTFG-EFGTITSAVVMRDGD- 249
Query: 69 GRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXX 128
G+SK +GFV F ++ ++A+ +NG + +G A +
Sbjct: 250 GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEA 309
Query: 129 EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNA 183
+ ++V LD ++ E L++ FS YG I S K+ V +G GFV F+ A
Sbjct: 310 ADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEA 369
Query: 184 EEALQKLNGTTIGKQTVRLSWGRNPANKPFR 214
AL ++NG + + + ++ + ++ R
Sbjct: 370 SRALLEMNGKMVASKPLYVTLAQRKEDRRAR 400
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 22/197 (11%)
Query: 4 PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 63
P +P R+ ++ ++S +IF+ +L + LH+TF++ + ++ + KV
Sbjct: 99 PLNNRPIRIMYSHRDPSIRKSGQG---NIFIKNLDKAIDHKALHDTFSS-FGNILSCKVA 154
Query: 64 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 123
D +G+SKGYGFV+F + +A+ ++NG+ + + + +G ++
Sbjct: 155 VDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQ----------ER 203
Query: 124 XXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVS-VKIPVGKG---C-GFVQFA 178
A+ NN +FV L + ++L++ F ++G I S V + G G C GFV F
Sbjct: 204 ESTGDRAKFNN--VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFE 261
Query: 179 NRNNAEEALQKLNGTTI 195
+ ++A A++ LNG I
Sbjct: 262 STDDAARAVEALNGKKI 278
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL +V D+ L++ F N+ V + +V D T RS GYG+V F + + ++A++
Sbjct: 33 SLYVGDLEVNVNDSQLYDLF-NQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N +++ +R+ +S IF+ LD ++ +
Sbjct: 92 VLNFTPMNNKSIRV----------------MYSHRDPSSRKSGTANIFIKNLDKTIDHKA 135
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 200
L FS +G+I+S KI KG GFVQF ++A+ A+ KLNG I + V
Sbjct: 136 LHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQV 190
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +L+ T+ L F Y ++ +A ++ DA+ GRSK +GFV F + + ++A+
Sbjct: 213 VYVKNLSESFTEDDLKNEFG-AYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEA 270
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAES-NNTTIFVGGLDPNVNAED 150
+NG + +G A + + +++ LD ++ E
Sbjct: 271 LNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEK 330
Query: 151 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 195
L++ FS++G I S KI V +G GFV F+ A AL ++NG I
Sbjct: 331 LKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMI 380
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 17 FSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGF 76
+S D S +IF+ +L + LH+TF++ + + + K+ D +G+SKGYGF
Sbjct: 107 YSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSS-FGQIMSCKIATDG-SGQSKGYGF 164
Query: 77 VRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT 136
V+F ++ A++++NG+ + + + +G ++ +++
Sbjct: 165 VQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL------------SKTKFNN 212
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLN 191
++V L + +DL+ F YG I S + K GFV F N +A +A++ LN
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALN 272
Query: 192 GTTI 195
G +
Sbjct: 273 GKKV 276
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 25 DNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 84
D L++++ +L +TD L E F+ ++ ++ + K++ D N G S+G GFV F E
Sbjct: 310 DKFQGLNLYLKNLDDSITDEKLKEMFS-EFGTITSYKIMRDPN-GVSRGSGFVAFSTPEE 367
Query: 85 RSQAMNEMNGVYCSSRPMRIGAA 107
S+A+ EMNG S+P+ + A
Sbjct: 368 ASRALGEMNGKMIVSKPLYVAVA 390
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQ 188
T+++VG L+ NVN L F+Q G++VSV++ G G+V F N +A AL
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 189 KLNGTTIGKQTVRLSWG-RNPANK 211
LN T + +++R+ + R+P+++
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSR 115
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL G+V D L++ F+ P V + +V D T S GYG+V + + + + AM
Sbjct: 26 SLYVGDLQGNVNDAQLYDLFSQIAP-VISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N V + +P+RI ++ +F+ L+ +++ +
Sbjct: 85 NLNYVPLNGKPIRI----------------MFSHRDPLIRKTGFANLFIKNLETSIDNKA 128
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L + FS +G ++S K+ + KG GFVQF N +A+ A++KL+G + + V + +
Sbjct: 129 LHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGY 187
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 3 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 62
+P +P R+ FS D ++F+ +L + + LHETF+ + +V + KV
Sbjct: 89 VPLNGKPIRI---MFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFS-VFGNVLSCKV 144
Query: 63 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 122
D+N G SKG+GFV+F +D A+ +++G+ + + + +G
Sbjct: 145 AMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFV-------------- 189
Query: 123 XXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQF 177
+ T ++V L + EDL+Q F+ +G I SV I K GFV F
Sbjct: 190 --RCQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNF 247
Query: 178 ANRNNAEEALQKLNGTT 194
+ ++A A++KLNG+T
Sbjct: 248 QSSDSAATAVEKLNGST 264
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +L+ T L + F N + + + ++ + G SK +GFV F + + A+ +
Sbjct: 202 VYVKNLSESYTYEDLKQLF-NSFGVITSV-LIMKYDNGNSKCFGFVNFQSSDSAATAVEK 259
Query: 92 MNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + + + +G A + + +++ +D ++N E
Sbjct: 260 LNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEK 319
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L++ FS++G I S K+ KG GFV F A +A+ ++NG IG++ V +S
Sbjct: 320 LKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVA 379
Query: 206 R 206
+
Sbjct: 380 Q 380
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 22 KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGD 81
KR + ++++ ++ + + L E F+ ++ ++ + KV+ DA GRSKG GFV F
Sbjct: 296 KRYEKFQGANLYLKNIDKSLNEEKLKELFS-EFGTITSCKVMSDAR-GRSKGVGFVAFTT 353
Query: 82 DNERSQAMNEMNGVYCSSRPMRIGAATPRK 111
E S+A++EMNG +P+ + A ++
Sbjct: 354 PEEASKAIDEMNGKIIGQKPVYVSVAQRKE 383
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 95/185 (51%), Gaps = 19/185 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV +LA + ++ L + F K+ ++ ++KVV + G+SKGYGFV+F + + A+
Sbjct: 100 VFVKNLAESIDNSGLEDMF-KKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIER 157
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+NG + + +G + ++ T +++ LD +++ L
Sbjct: 158 LNGYLVGDKQIYVGKFVKKSDRISSG------------PDTRYTNLYMKNLDLDISETLL 205
Query: 152 RQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
R+ FS +G+I+S+ + + KG GFV F N +A+ A++ +NG +G + + ++ +
Sbjct: 206 REKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQ 265
Query: 207 NPANK 211
A +
Sbjct: 266 KKAER 270
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 22 KRSDNV---PDL---SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 75
K+SD + PD ++++ +L D+++T+L E F++ + + + V D+N G SKG+G
Sbjct: 175 KKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS-FGKIISLAVAKDSN-GMSKGFG 232
Query: 76 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNT 135
FV F + + +AM MNG+ S+ + + A + + +
Sbjct: 233 FVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGS 292
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKL 190
I+V +D NV+ E LR FS G I S KI + KG GFV F+ A +A+
Sbjct: 293 NIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSF 352
Query: 191 NG 192
+G
Sbjct: 353 HG 354
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 30/177 (16%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P +++VGDL DVTD L++ F+ ++ ++ +A+V D+ TG+S YG+V E +
Sbjct: 13 PAATLYVGDLHSDVTDAQLYKAFS-EFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIR 71
Query: 88 AMNEMNGVYCSSRPMRIG----AATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLD 143
A+ N + + +R+ A RK S +FV L
Sbjct: 72 AIELKNHSSLNGKVIRVMWLSRDADARK--------------------SGKGNVFVKNLA 111
Query: 144 PNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 195
+++ L F +YG I+S KI KG G++QF + +A A+QK+NG+T+
Sbjct: 112 ASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTV 168
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV +LA + + LH+ F KY ++ ++K+ + G+SKG+G+++F + + A+ +
Sbjct: 105 VFVKNLAASIDNVGLHDLF-QKYGNILSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQK 162
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
MNG + + +G + + ++ T ++V LDP V + L
Sbjct: 163 MNGSTVRDKQIYVGKFIRK------------SERSLPDLDAKFTNLYVKNLDPVVTEKHL 210
Query: 152 RQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+ FS +G+IVS+ I KG GFV + + ++A A++ ++G+ G + + ++ +
Sbjct: 211 GEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQ 270
Query: 207 NPANK 211
+
Sbjct: 271 KKVER 275
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 22 KRSDNVPDL-----SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGF 76
K ++PDL +++V +L VT+ L E F++ + + + + D N G+SKG+GF
Sbjct: 181 KSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS-FGKIVSLAIKKDEN-GQSKGFGF 238
Query: 77 VRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT 136
V + ++ +AM M+G S+ + + A +K SN
Sbjct: 239 VNYDSPDDARRAMEAMDGSQFGSKILYVARA-QKKVEREQILHHLFVEKGLKHMGSN--- 294
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLN 191
I+V +D +V E+LR FS GE++S K+ KG GFV F+ A +++ N
Sbjct: 295 IYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFN 354
Query: 192 GT 193
G
Sbjct: 355 GC 356
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
DL IFVG+L DV L + F + +V+ A+V+++ +T RS+G+GFV E +A
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLF-EQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 89 MNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
+N+ +G R + + A PR ++ +VG L +V+
Sbjct: 180 VNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTF----------NSGLRAYVGNLPWDVDN 229
Query: 149 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
L Q FS++G++ S ++ +G GFV +N +A+ L+G + + +R+
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 203 SWGRNPANKPF 213
+ + F
Sbjct: 290 NVAEERPRRSF 300
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 4 PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 63
P E+P R+ FS D ++F+ +L + LH+TFA P V + KV
Sbjct: 95 PLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-VLSCKVA 150
Query: 64 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 123
D N G+SKGYGFV+F ++ A+ +++G+ + + + +G +
Sbjct: 151 LDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ------------ 197
Query: 124 XXXXXEAESNN----TTIFVGGLDPNVNAEDLRQPFSQYGEIVS---VKIPVGKG-C-GF 174
A +N T ++V + EDL+Q F +G I S +K GK C GF
Sbjct: 198 ----ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGF 253
Query: 175 VQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
V F + ++A A++KLNGT I V L GR
Sbjct: 254 VNFQSPDSAAAAVEKLNGTAINDDKV-LFVGR 284
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL G V + L + F+ + V + +V D S GY +V F + + + A
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFS-QVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N + +P+RI +S + +F+ LD +++ +
Sbjct: 90 LLNFTPLNEKPIRI----------------MFSQRDPSVRKSGSGNVFIKNLDTSIDHKA 133
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L F+ +G ++S K+ + KG GFVQF N A+ A+++L+G I + V + +
Sbjct: 134 LHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGF 192
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 23 RSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGD 81
R++ P + ++V +++ TD L + F + + +A V+ DAN G+S+ +GFV F
Sbjct: 201 RTNGSPKFTNVYVKNISEASTDEDLKQLFG-PFGMITSATVMKDAN-GKSRCFGFVNFQS 258
Query: 82 DNERSQAMNEMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+ + A+ ++NG + + + +G A + + +++
Sbjct: 259 PDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLK 318
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTI 195
LD + N E L+ FS++G + S ++ + KG GFV F+ A +AL ++NG +
Sbjct: 319 NLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLV 378
Query: 196 GKQ 198
G++
Sbjct: 379 GRK 381
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 4 PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVV 63
P E+P R+ FS D ++F+ +L + LH+TFA P V + KV
Sbjct: 95 PLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-VLSCKVA 150
Query: 64 FDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 123
D N G+SKGYGFV+F ++ A+ +++G+ + + + +G +
Sbjct: 151 LDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ------------ 197
Query: 124 XXXXXEAESNN----TTIFVGGLDPNVNAEDLRQPFSQYGEIVS---VKIPVGKG-C-GF 174
A +N T ++V + EDL+Q F +G I S +K GK C GF
Sbjct: 198 ----ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGF 253
Query: 175 VQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
V F + ++A A++KLNGT I V L GR
Sbjct: 254 VNFQSPDSAAAAVEKLNGTAINDDKV-LFVGR 284
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S++VGDL G V + L + F+ + V + +V D S GY +V F + + + A
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFS-QVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+N + +P+RI +S + +F+ LD +++ +
Sbjct: 90 LLNFTPLNEKPIRI----------------MFSQRDPSVRKSGSGNVFIKNLDTSIDHKA 133
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 204
L F+ +G ++S K+ + KG GFVQF N A+ A+++L+G I + V + +
Sbjct: 134 LHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGF 192
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 23 RSDNVPDLS-IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGD 81
R++ P + ++V +++ TD L + F + + +A V+ DAN G+S+ +GFV F
Sbjct: 201 RTNGSPKFTNVYVKNISEASTDEDLKQLFG-PFGMITSATVMKDAN-GKSRCFGFVNFQS 258
Query: 82 DNERSQAMNEMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+ + A+ ++NG + + + +G A + + +++
Sbjct: 259 PDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLK 318
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTI 195
LD + N E L+ FS++G + S ++ + KG GFV F+ A +AL ++NG +
Sbjct: 319 NLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLV 378
Query: 196 GKQ 198
G++
Sbjct: 379 GRK 381
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D +F GDL +V D +L + F ++PS A+VV D TG++KGYGF+ F + + + A
Sbjct: 131 DYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 89 MNEMNGVYCSSRPMRI 104
+ EMNG Y +RP+++
Sbjct: 190 LKEMNGKYVGNRPIKL 205
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV +L + + +LH+TFA + +V + KV D+N G+S GYGFV++ + A+ +
Sbjct: 17 VFVKNLDTSIDNKVLHDTFAT-FGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIEK 74
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
++G+ + +G R+ T ++V L EDL
Sbjct: 75 LDGMLIKDKKAFVGYFIRRQERSE-------------NGSPKFTNVYVKNLLETDTDEDL 121
Query: 152 RQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTT 194
++ FS YG I S I K GFV F + ++A A++KLNGTT
Sbjct: 122 KKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTT 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++V +L TD L + F+ Y + +A ++ D N G SK +GFV F + + A+ +
Sbjct: 107 VYVKNLLETDTDEDLKKLFST-YGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEK 164
Query: 92 MNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+NG + + + +G A + + +++ LD ++N E
Sbjct: 165 LNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEK 224
Query: 151 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L++ FS++G I S K+ KG GFV F+ A +A+ ++G IG++ + +
Sbjct: 225 LKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVA 284
Query: 206 RNPANKPFR 214
+ ++ R
Sbjct: 285 QRKEDRKTR 293
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 22 KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGD 81
KR + + ++++ +L + D L E F+ ++ ++ + KV+FDA+ G SKG+GFV F
Sbjct: 201 KRYEKLQGANLYLKNLDESINDEKLKEMFS-EFGTITSCKVMFDAH-GHSKGFGFVAFST 258
Query: 82 DNERSQAMNEMNGVYCSSRPMRIGAA 107
E S+A+N M+G +P+ + A
Sbjct: 259 SEEASKAINGMSGKIIGQKPLYVVVA 284
>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
chr3:35625559-35621770 | 20130731
Length = 492
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 136 TIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKL-NGTT 194
T++VGGLD V +DLR F +GEI SVK+ + + C FV + R AE+A ++L N
Sbjct: 229 TLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLV 288
Query: 195 IGKQTVRLSWGRNPANKP 212
I ++L WGR + KP
Sbjct: 289 IKGLRLKLMWGRPQSAKP 306
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 16 TFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 75
TF GD P+ +FVG+L V L E F N V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 76 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP--------RKXXXXXXXXXXXXXXXX 127
FV E A ++NG R +R+ A P R
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 181
+ + + VG L V+ L F + G+++ K+ +G GFV F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 182 NAEEALQKLNGTTIGKQTVRLS 203
+ A++ L+G + + +R+S
Sbjct: 249 EVDSAIRTLDGADLNGRAIRVS 270
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D + VG+LA V + L F + V AKV++D +GRS+G+GFV F +E A
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQG-QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA 253
Query: 89 MNEMNGVYCSSRPMRIGAATPR 110
+ ++G + R +R+ A R
Sbjct: 254 IRTLDGADLNGRAIRVSPADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 16 TFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 75
TF GD P+ +FVG+L V L E F N V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 76 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP--------RKXXXXXXXXXXXXXXXX 127
FV E A ++NG R +R+ A P R
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 128 XEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 181
+ + + VG L V+ L F + G+++ K+ +G GFV F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 182 NAEEALQKLNGTTIGKQTVRLS 203
+ A++ L+G + + +R+S
Sbjct: 249 EVDSAIRTLDGADLNGRAIRVS 270
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D + VG+LA V + L F + V AKV++D +GRS+G+GFV F +E A
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQG-QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA 253
Query: 89 MNEMNGVYCSSRPMRIGAATPR 110
+ ++G + R +R+ A R
Sbjct: 254 IRTLDGADLNGRAIRVSPADSR 275
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D +FVG+ DV L F + +V+ A+V+++ T S+G+GFV E A
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFG-QAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 89 MNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
+ + NG + R + + A+P+ I+V L V+
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR-------IYVANLAWEVDN 219
Query: 149 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 202
L Q FS++G+IVS ++ +G GFV ++ +A+ L+G ++ +T+R+
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
Query: 203 SWGRNPANKPFRGDF 217
S ++P RG F
Sbjct: 280 SVAE---DRPRRGSF 291
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P L I+V +LA +V ++ L + F+ ++ + +A+VV+D TGRS+G+GFV D+ E +
Sbjct: 204 PVLRIYVANLAWEVDNSRLEQVFS-EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMND 262
Query: 88 AMNEMNGVYCSSRPMRIGAATPR 110
A+ ++G R +R+ A R
Sbjct: 263 AIAALDGQSLEGRTIRVSVAEDR 285
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
I+ G+L D+T L + FA K P + +AKVV++ N G+S+GYGFV F + A++
Sbjct: 209 IYAGNLGWDMTSQYLRKAFA-KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 92 MNGVYCSSRPMRIGAAT 108
MNGV RP+R+ A
Sbjct: 268 MNGVEVQGRPLRLKLAV 284
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 129 EAESNNTT-IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 181
EAES + +FVG L ++++ L Q F + G +VSV+I +G FV N
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 182 NAEEALQKLNGTTIGKQTVRLSWGRNP 208
+AEEA++ +GTT+G + +++++ P
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVNFPEVP 187
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
I+ G+L D+T L + FA K P + +AKVV++ N G+S+GYGFV F + A++
Sbjct: 209 IYAGNLGWDMTSQYLRKAFA-KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 92 MNGVYCSSRPMRIGAAT 108
MNGV RP+R+ A
Sbjct: 268 MNGVEVQGRPLRLKLAV 284
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 129 EAESNNTT-IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 181
EAES + +FVG L ++++ L Q F + G +VSV+I +G FV N
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 182 NAEEALQKLNGTTIGKQTVRLSWGRNP 208
+AEEA++ +GTT+G + +++++ P
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVNFPEVP 187
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D + +VG+L +++ +L E F P V V D T + +GYGFV F + + A
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQGYGFVEFRSEEDADYA 82
Query: 89 MNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
+ +N + +P+R+ A+ K ++ +F+G LDP+V+
Sbjct: 83 IKVLNMIKLYGKPIRVNKASQDK-----------------KSLDVGANLFIGNLDPDVDE 125
Query: 149 EDLRQPFSQYGEIVS----VKIPV---GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 201
+ L FS +G IV+ ++ P +G GF+ + + ++ A++ +NG + + +
Sbjct: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQIT 185
Query: 202 LSWG 205
+S+
Sbjct: 186 VSYA 189
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 8 QPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDAN 67
+P R+N A+ DK+S +V ++F+G+L DV + +L++TF+ V K++ D +
Sbjct: 94 KPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 149
Query: 68 TGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 107
TG S+G+GF+ + A+ MNG Y +R + + A
Sbjct: 150 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 26 NVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 85
+ P +++V +L+ DVTD+ L + F +Y ++ + + ++ Y FV F ++
Sbjct: 23 STPSNNLYVANLSPDVTDSDLMDLFV-QYGALDSV------TSYSARNYAFVFFKRIDDA 75
Query: 86 SQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPN 145
A N + G +RI A P K ++VGG+ P
Sbjct: 76 KAAKNALQGFNFRGNSLRIEFARPAKTC---------------------KQLWVGGISPA 114
Query: 146 VNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
V EDL F ++G++ K + V+F N ++A +A++ +NG IG + +R+ +
Sbjct: 115 VTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFL 174
Query: 206 RN 207
R+
Sbjct: 175 RS 176
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 26 NVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 85
+ P +++V +L+ DVTD+ L + F +Y ++ + + ++ Y FV F ++
Sbjct: 23 STPSNNLYVANLSPDVTDSDLMDLFV-QYGALDSV------TSYSARNYAFVFFKRIDDA 75
Query: 86 SQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPN 145
A N + G +RI A P K ++VGG+ P
Sbjct: 76 KAAKNALQGFNFRGNSLRIEFARPAKTC---------------------KQLWVGGISPA 114
Query: 146 VNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
V EDL F ++G++ K + V+F N ++A +A++ +NG IG + +R+ +
Sbjct: 115 VTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFL 174
Query: 206 RN 207
R+
Sbjct: 175 RS 176
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 16/197 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F N + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ R + A PR IFVGGL V D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIGKQTVR 201
+ F Q+G I V + +G GF+ + + E+ L K LNG + V+
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV---EVK 179
Query: 202 LSWGRNPANKPFRGDFG 218
+ ++ + P RG G
Sbjct: 180 RAVPKDLSPSPSRGQLG 196
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 16/197 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F N + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ R + A PR IFVGGL V D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIGKQTVR 201
+ F Q+G I V + +G GF+ + + E+ L K LNG + V+
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV---EVK 179
Query: 202 LSWGRNPANKPFRGDFG 218
+ ++ + P RG G
Sbjct: 180 RAVPKDLSPSPSRGQLG 196
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 16/197 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L + F N + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ R + A PR IFVGGL V D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIGKQTVR 201
+ F Q+G I V + +G GF+ + + E+ L K LNG + V+
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV---EVK 179
Query: 202 LSWGRNPANKPFRGDFG 218
+ ++ + P RG G
Sbjct: 180 RAVPKDLSPSPSRGQLG 196
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG ++ + T+ L F KY V + + FD T +G+GFV F D + A+ +
Sbjct: 12 LFVGGISRETTEDTLKHHFT-KYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNN-----TTIFVGGLDPNV 146
+ + R + + A PR E N IFVGGL N+
Sbjct: 71 THAIL--GRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANM 128
Query: 147 NAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ E+ ++ F ++G I V + +G GF+ F + ++ + + + LNG +
Sbjct: 129 SVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQV 187
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V DT L F +Y ++ + +G+ + + D
Sbjct: 194 PSRTLFVRNINSNVEDTELRTLFE-QYGDIRTLYTAC-----KHRGFVMISYYDIRAART 247
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ + + N T+ V LDP+V+
Sbjct: 248 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------DKDINQGTLVVFNLDPSVS 293
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
EDLRQ F YGE+ ++ P + F+++ + AE AL+ LN + I + ++L R
Sbjct: 294 NEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSR 353
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V DT L F +Y ++ + +G+ + + D
Sbjct: 194 PSRTLFVRNINSNVEDTELRTLFE-QYGDIRTLYTAC-----KHRGFVMISYYDIRAART 247
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ + + N T+ V LDP+V+
Sbjct: 248 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------DKDINQGTLVVFNLDPSVS 293
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
EDLRQ F YGE+ ++ P + F+++ + AE AL+ LN + I + ++L R
Sbjct: 294 NEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSR 353
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG+LA VT L + F ++ +V A+V+FD TG+S+GYGFV + +E A+
Sbjct: 206 LFVGNLAWTVTSESLTQAF-QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 92 MNGVYCSSRPMRIGAATPRK 111
M+ V R +R+ A ++
Sbjct: 265 MDNVELEGRTLRVSLAQGKR 284
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 20/181 (11%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++ G+L V D+ L +Y S + +V++D +TG+S+G+ FV + + +
Sbjct: 115 LYFGNLPYSV-DSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
++G R +R+ + K E E +FVG L V +E L
Sbjct: 174 LDGKEFMGRTLRVNFSDKPK----------PKEPLYPETEYK---LFVGNLAWTVTSESL 220
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
Q F ++G +V ++ +G GFV +A ++ + AL ++ + +T+R+S
Sbjct: 221 TQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
Query: 206 R 206
+
Sbjct: 281 Q 281
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
+ +S+N + +FVG + +T+ L F ++ V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLF-KEFAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+E +A+N C ++ GA++P + E E +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNG 192
L N++ ++ FS+YG I ++I G KGC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 17 FSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFAN--KYPSVKAAKVVFDANTGR--SK 72
S D D + S+FV +L TD +L E F+ K + + KV G+ S
Sbjct: 628 ISDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSM 687
Query: 73 GYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAES 132
G+GFV F + N++ G + + + E +
Sbjct: 688 GFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVK--------NDDDKVQKKVEKDK 739
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG----KGCGFVQFANRNNAEEALQ 188
++T + V + +DLRQ FS +G+I S+++P+ +G FV++ + A+ AL
Sbjct: 740 SSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALT 799
Query: 189 KLNGTTI-GKQTV 200
L+ T + G+ V
Sbjct: 800 ALSSTHLYGRHLV 812
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E F+ Y VK A ++ D TGR++G+GFV F D + E
Sbjct: 8 LFIGGISWDTNEERLREYFS-TYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + R + A PR + IFVGGL V D
Sbjct: 67 KHNI--DGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRK--IFVGGLASTVTESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIG-KQTV 200
++ F Q+G I V + +G GF+ + + ++ L K LNG + K+ V
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAV 182
Query: 201 RLSWGRNPANKPFRG 215
PA P G
Sbjct: 183 PKELSPGPARSPLSG 197
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
+ +S+N + +FVG + +T+ L F ++ V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLF-KEFAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+E +A+N C ++ GA++P + E E +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNG 192
L N++ ++ FS+YG I ++I G KGC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F + T+ ++E F+ K V+ +++ D N+ RSKG G++ F D A+
Sbjct: 203 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
++G +P+ + + K A + ++VG L N+ +
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGA--VDRKLYVGNLHFNMTEAN 318
Query: 151 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 203
LR+ F +G+I V++P+ KG GFVQFA+ +A +A Q LNG I +T+++S
Sbjct: 319 LREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVS 377
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E F+ Y VK A ++ D TGR++G+GFV F D + E
Sbjct: 8 LFIGGISWDTNEERLREYFS-TYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ + R + A PR + IFVGGL V D
Sbjct: 67 KHNI--DGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRK--IFVGGLASTVTESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIG-KQTV 200
++ F Q+G I V + +G GF+ + + ++ L K LNG + K+ V
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAV 182
Query: 201 RLSWGRNPANKPFRG 215
PA P G
Sbjct: 183 PKELSPGPARSPLSG 197
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
I+ G+L + L + F ++ P + AK++++ + GRS+G+GFV F A+N
Sbjct: 214 IYAGNLGWGMNSQDLRDAF-DEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 92 MNGVYCSSRPMRIGAATPR 110
MNGV RP+R+ A R
Sbjct: 273 MNGVEVQGRPLRLNLAAAR 291
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG+L +T + L + FA + +V + ++V+D T RS+G+ FV E +A+
Sbjct: 111 LYVGNLPFSMTSSQLADIFA-EAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+G R ++ K +S + I+ G L +N++DL
Sbjct: 170 FDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPH-KIYAGNLGWGMNSQDL 228
Query: 152 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
R F + ++ KI +G GFV F + E AL +NG + + +RL+
Sbjct: 229 RDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLA 288
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ +T L E F+ +Y V AK++ D +TGRS+G+GF+ F E S A+
Sbjct: 42 LFIGGVSYSTDETGLREAFS-RYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+ R +R+ AT R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 190
+F+GG+ + + LR+ FS+YG+++ KI + +G GF+ FA A ALQ +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 191 NGTTIGKQTVRLSWGRNPANKPF 213
+ + +TVR+++ A F
Sbjct: 102 DNKELDGRTVRVNYATERARPGF 124
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ +T L E F+ +Y V AK++ D +TGRS+G+GF+ F E S A+
Sbjct: 42 LFIGGVSYSTDETGLREAFS-RYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+ R +R+ AT R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 137 IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 190
+F+GG+ + + LR+ FS+YG+++ KI + +G GF+ FA A ALQ +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 191 NGTTIGKQTVRLSWGRNPANKPF 213
+ + +TVR+++ A F
Sbjct: 102 DNKELDGRTVRVNYATERARPGF 124
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 29 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 88
D +FVG+ DV L F + +V+ A+V+++ T S+G+GFV E A
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFG-QAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 89 MNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNA 148
+ + NG + R + + A+P+ I+V L V+
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR-------IYVANLAWEVDN 219
Query: 149 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNG 192
L Q FS++G+IVS ++ +G GFV ++ +A+ L+G
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P L I+V +LA +V ++ L + F+ ++ + +A+VV+D TGRS+G+GFV D+ E +
Sbjct: 204 PVLRIYVANLAWEVDNSRLEQVFS-EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMND 262
Query: 88 AMNEMNG 94
A+ ++G
Sbjct: 263 AIAALDG 269
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 42 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 101
DT + + +KY ++ V+ + +TGRS+G+G+V F ++ + ++ + R
Sbjct: 15 VDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGDRM 72
Query: 102 MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
+ + ATP++ T IFV + P+V E R F +YG+I
Sbjct: 73 LEVKVATPKEEMRAPA--------------KKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 162 VSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 195
+ +P + +G GF+ F N + E + +L G+ +
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 42 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 101
DT + + +KY ++ V+ + +TGRS+G+G+V F ++ + ++ + R
Sbjct: 15 VDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGDRM 72
Query: 102 MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
+ + ATP++ T IFV + P+V E R F +YG+I
Sbjct: 73 LEVKVATPKEEMRAPA--------------KKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 162 VSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 195
+ +P + +G GF+ F N + E + +L G+ +
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 42 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 101
DT + + +KY ++ V+ + +TGRS+G+G+V F ++ + ++ + R
Sbjct: 15 VDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGDRM 72
Query: 102 MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
+ + ATP++ T IFV + P+V E R F +YG+I
Sbjct: 73 LEVKVATPKEEMRAPA--------------KKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 162 VSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 195
+ +P + +G GF+ F N + E + +L G+ +
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 42 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 101
DT + + +KY ++ V+ + +TGRS+G+G+V F ++ + ++ + R
Sbjct: 15 VDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGDRM 72
Query: 102 MRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEI 161
+ + ATP++ T IFV + P+V E R F +YG+I
Sbjct: 73 LEVKVATPKEEMRAPA--------------KKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 162 VSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 195
+ +P + +G GF+ F N + E + +L G+ +
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V D+ L F +Y ++ + +G+ + + D
Sbjct: 196 PSRTLFVRNINSNVEDSELRTLF-EQYGDIRTLYTAC-----KHRGFVMISYYDIRAART 249
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ E + N T+ V LDP+V+
Sbjct: 250 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVS 295
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+DLRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 296 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 355
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V D+ L F +Y ++ + +G+ + + D
Sbjct: 91 PSRTLFVRNINSNVEDSELRTLF-EQYGDIRTLYTAC-----KHRGFVMISYYDIRAART 144
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ E + N T+ V LDP+V+
Sbjct: 145 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVS 190
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+DLRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 191 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 250
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V D+ L F +Y ++ + +G+ + + D
Sbjct: 207 PSRTLFVRNINSNVEDSELRTLF-EQYGDIRTLYTAC-----KHRGFVMISYYDIRAART 260
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ E + N T+ V LDP+V+
Sbjct: 261 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVS 306
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+DLRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 307 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 366
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V D+ L F +Y ++ + +G+ + + D
Sbjct: 193 PSRTLFVRNINSNVEDSELRTLF-EQYGDIRTLYTAC-----KHRGFVMISYYDIRAART 246
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ E + N T+ V LDP+V+
Sbjct: 247 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVS 292
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+DLRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 293 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 352
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 28 PDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 87
P ++FV ++ +V D+ L F +Y ++ + +G+ + + D
Sbjct: 196 PSRTLFVRNINSNVEDSELRTLF-EQYGDIRTLYTAC-----KHRGFVMISYYDIRAART 249
Query: 88 AMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVN 147
AM + R + I + P+ E + N T+ V LDP+V+
Sbjct: 250 AMRALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVS 295
Query: 148 AEDLRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
+DLRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 296 NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 355
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 21 DKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFG 80
+ +S+N + +FVG + +T+ L F ++ V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLF-KEFAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 81 DDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVG 140
+E +A+N C ++ GA++P + E E +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 141 GLDPNVNAEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRNNAEEALQKLNG 192
L N++ ++ FS+YG I ++I G GC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAING 167
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FV L+G+ T L F++ Y + A V+FD TGRSKGYGFV + + A+ E
Sbjct: 78 LFVRGLSGETTTETLRTVFSS-YGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
P K + ++ +FVG + V+AE L
Sbjct: 137 -----------------PSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESL 179
Query: 152 RQPFSQYGEI----VSVKIPVGKGCGFVQFA------NRNNAEEALQKLNGTTI 195
FS+YGEI + GK GF F +N+ E+++ ++G +
Sbjct: 180 LSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQV 233
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 41/195 (21%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F + T+ ++E F+ K V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT-------------- 136
++G +P+ + + K +SN TT
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNL----------------VQSNTTTGAAGVVGPYGAVDR 317
Query: 137 -IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK 189
++VG L N+ LR+ F +G + V++P+ KG GF+QFA+ +A +A Q
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 190 LNGTT-IGKQTVRLS 203
LNG I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 41/195 (21%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F + T+ ++E F+ K V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT-------------- 136
++G +P+ + + K +SN TT
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNL----------------VQSNTTTGAAGVVGPYGAVDR 317
Query: 137 -IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK 189
++VG L N+ LR+ F +G + V++P+ KG GF+QFA+ +A +A Q
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 190 LNGTT-IGKQTVRLS 203
LNG I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 41/195 (21%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++F + T+ ++E F+ K V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFS-KAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTT-------------- 136
++G +P+ + + K +SN TT
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNL----------------VQSNTTTGAAGVVGPYGAVDR 317
Query: 137 -IFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK 189
++VG L N+ LR+ F +G + V++P+ KG GF+QFA+ +A +A Q
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQS 376
Query: 190 LNGTT-IGKQTVRLS 203
LNG I +T+++S
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+ L+ + +T+L +TF ++ + KV+ + TG SKGYGFVRF + + A E
Sbjct: 35 LFIAGLSYNTNETVLRDTF-EQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 92 MNGVYCSSRPMRIGAA 107
++G R +R+G A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 131 ESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAE 184
++T +F+ GL N N LR F Q+G+I+ VK+ KG GFV+F + A
Sbjct: 29 HHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAA 88
Query: 185 EALQKLNGTTIGKQTVRLSWG 205
A ++L+G + + +R+ +
Sbjct: 89 TARKELHGQIVDGRRIRVGYA 109
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
++VG ++ D L E+FA +Y V A+V+ D GRSKG+GFV F E S A+
Sbjct: 42 LYVGGISYSTDDAGLRESFA-RYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+ R +R+ A R
Sbjct: 101 MDNQELHGRTVRVNYAQER 119
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 186
++ ++VGG+ + + LR+ F++YG+++ ++ + KG GFV FA A A
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 187 LQKLNGTTIGKQTVRLSWGR 206
LQ ++ + +TVR+++ +
Sbjct: 98 LQAMDNQELHGRTVRVNYAQ 117
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 30 LSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 89
+FVG L+ T+ L + F+N Y V AKV+ D + +SKGYGFV F +E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSN-YGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 90 NEMNGVYCSSRPMRIGAATP 109
EMN + R + + A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45037623 | 20130731
Length = 923
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FVG++ + D+ L F +Y ++ + +G+ + + D AM
Sbjct: 271 TLFVGNITSNAEDSELKALF-EQYGDIRTLYTAC-----KHRGFVMISYYDLRAAQNAMK 324
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ SSR + I + P+ E + + T+ + GLD V ++
Sbjct: 325 ALQNRTLSSRKLDIRYSIPK--------------GNPTEKDIGHGTLMISGLDSAVLKDE 370
Query: 151 LRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 371 LKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGH 427
>Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044605-45036753 | 20130731
Length = 923
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FVG++ + D+ L F +Y ++ + +G+ + + D AM
Sbjct: 271 TLFVGNITSNAEDSELKALF-EQYGDIRTLYTAC-----KHRGFVMISYYDLRAAQNAMK 324
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ SSR + I + P+ E + + T+ + GLD V ++
Sbjct: 325 ALQNRTLSSRKLDIRYSIPK--------------GNPTEKDIGHGTLMISGLDSAVLKDE 370
Query: 151 LRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 371 LKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGH 427
>Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044593-45036753 | 20130731
Length = 923
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FVG++ + D+ L F +Y ++ + +G+ + + D AM
Sbjct: 271 TLFVGNITSNAEDSELKALF-EQYGDIRTLYTAC-----KHRGFVMISYYDLRAAQNAMK 324
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ SSR + I + P+ E + + T+ + GLD V ++
Sbjct: 325 ALQNRTLSSRKLDIRYSIPK--------------GNPTEKDIGHGTLMISGLDSAVLKDE 370
Query: 151 LRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 371 LKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGH 427
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+FVG L+ V + L + F++ + V ++V+D ++GR++G+GFV F +++ A +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 92 MNGVYCSSRPMRIGAATPR 110
M+G RP+RI A +
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45043643-45036753 | 20130731
Length = 969
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FVG++ + D+ L F +Y ++ + +G+ + + D AM
Sbjct: 271 TLFVGNITSNAEDSELKALF-EQYGDIRTLYTAC-----KHRGFVMISYYDLRAAQNAMK 324
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ SSR + I + P+ E + + T+ + GLD V ++
Sbjct: 325 ALQNRTLSSRKLDIRYSIPK--------------GNPTEKDIGHGTLMISGLDSAVLKDE 370
Query: 151 LRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 371 LKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGH 427
>Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45036736 | 20130731
Length = 969
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
++FVG++ + D+ L F +Y ++ + +G+ + + D AM
Sbjct: 271 TLFVGNITSNAEDSELKALF-EQYGDIRTLYTAC-----KHRGFVMISYYDLRAAQNAMK 324
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ SSR + I + P+ E + + T+ + GLD V ++
Sbjct: 325 ALQNRTLSSRKLDIRYSIPK--------------GNPTEKDIGHGTLMISGLDSAVLKDE 370
Query: 151 LRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 206
L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 371 LKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGH 427
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
S+ V +L+ D + LHE F + SV V D NTG S+G+GFV F + + +A+N
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 91 EMNGVYCSSRPMRIGAATPR 110
++NG + +++ ATPR
Sbjct: 259 KLNGYGYDNLILKVEWATPR 278
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 15/174 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E FA Y V A ++ D TGR++G+GFV F D + + +
Sbjct: 8 LFIGGISWDTDEERLKEYFA-TYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ R + A PR + IFVGGL + D
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKK--IFVGGLPSTITESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ F Q+G I V + +G GF+ + + + L K LNG +
Sbjct: 123 KMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 15/174 (8%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G ++ D + L E FA Y V A ++ D TGR++G+GFV F D + + +
Sbjct: 8 LFIGGISWDTDEERLKEYFA-TYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ R + A PR + IFVGGL + D
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKK--IFVGGLPSTITESDF 122
Query: 152 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 195
+ F Q+G I V + +G GF+ + + + L K LNG +
Sbjct: 123 KMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 27 VPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 86
P +F+G ++ + L E F+ +Y V A+++ D TGRS+G+GF+ F E S
Sbjct: 39 APTTKLFIGGVSYSTDENSLREAFS-RYGEVLDARIIMDRETGRSRGFGFITFNSVEEAS 97
Query: 87 QAMNEMNGVYCSSRPMRIGAATPR 110
A+ ++G R +R+ A R
Sbjct: 98 SAIQALDGQDLHGRRVRVNYANER 121
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 188
T +F+GG+ + + LR+ FS+YGE++ +I + +G GF+ F + A A+Q
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 189 KLNGTTIGKQTVRLSW 204
L+G + + VR+++
Sbjct: 102 ALDGQDLHGRRVRVNY 117
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 27/165 (16%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IF+G LA + T + F KY + + ++ D TG+ +G+GF+ + D + + + +
Sbjct: 47 IFIGGLARETTIAQFIKHFG-KYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
+ +S+ + I PR + IFVGG+ NV ++
Sbjct: 106 SH--IINSKQVEIKRTIPR--------------GAVGSKDFRTKKIFVGGIPSNVTEDEF 149
Query: 152 RQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKL 190
R F++YGE+ +I +G GFV F + EEA+ L
Sbjct: 150 RDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTF----DTEEAVDDL 190
>Medtr8g070490.1 | RNA recognition motif (RRM) containing protein |
HC | chr8:29979285-29991364 | 20130731
Length = 1031
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFANRNNAEE 185
T ++VG L P V+ L + F ++G I SVKI + CGFV F NR + +
Sbjct: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
Query: 186 ALQKLNGTTIGKQTVRLSWGRNPA 209
A ++ G + + +++ WG++ A
Sbjct: 246 AKDEMQGVVVYEYELKIGWGKSVA 269
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 20/208 (9%)
Query: 11 RLNWATFSTGD-KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFD-ANT 68
LN F G K S + +F+G++ + L + ++ P V A +++ D N
Sbjct: 410 ELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNI 469
Query: 69 GRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXX 128
++GY F+ + ++ + +M +S ++G P
Sbjct: 470 SNNRGYAFIDYHNNQCAEYSRQKM-----TSPSFKLGDNFP-------TVNWAEPKNADS 517
Query: 129 EAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRNN 182
A S ++V L NV E L++ F +G+I V +P K GFV FA R+N
Sbjct: 518 SASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSN 577
Query: 183 AEEALQKLNGTTIGKQTVRLSWGRNPAN 210
A +AL+ + Q + S + A+
Sbjct: 578 AMKALKNTEKYVLDGQILECSLAKQQAD 605
>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:49138254-49142925 | 20130731
Length = 314
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 135 TTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 188
+ + V L + EDLR PF +YG + V +P +G GFV++ + +A EA Q
Sbjct: 48 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQ 107
Query: 189 KLNGTTIGKQTVRL 202
+LN T IG + +R+
Sbjct: 108 QLNHTIIGGREIRI 121
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
+F+G L+ +V D L + F Y V A+V+ D TGRS+G+GFV F + + A++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTT-YGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 92 MNGVYCSSRPMRIGAATPRK 111
M+G + R +R+ A R+
Sbjct: 96 MDGQDLNGRNIRVSYANDRQ 115
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 33 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 92
FVG LA L + F+ K+ + +KV+ D TGRS+G+GFV F ++ A+ EM
Sbjct: 11 FVGGLAWATDSQALEQAFS-KFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 93 NGVYCSSRPMRIGAA 107
NG R + + A
Sbjct: 70 NGQDIDGRNITVNEA 84
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFV L D T L TF+ KY ++ K V D +G+SKGY F+ F +A+ +
Sbjct: 167 IFVHGLGWDATAETLTTTFS-KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
V IG T +E IFV + +++ + L
Sbjct: 226 PQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKL 277
Query: 152 RQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQKLN 191
+ F Q+GE+ + + GK GF F + +A++AL++ N
Sbjct: 278 LEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFV L D T L TF+ KY ++ K V D +G+SKGY F+ F +A+ +
Sbjct: 167 IFVHGLGWDATAETLTTTFS-KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
V IG T +E IFV + +++ + L
Sbjct: 226 PQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKL 277
Query: 152 RQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQKLN 191
+ F Q+GE+ + + GK GF F + +A++AL++ N
Sbjct: 278 LEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 91
IFV L D T L TF+ KY ++ K V D +G+SKGY F+ F +A+ +
Sbjct: 167 IFVHGLGWDATAETLTTTFS-KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 92 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAEDL 151
V IG T +E IFV + +++ + L
Sbjct: 226 PQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKL 277
Query: 152 RQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQKLN 191
+ F Q+GE+ + + GK GF F + +A++AL++ N
Sbjct: 278 LEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFANRNNAEEAL 187
++++I+VGGL E +R F+ YG I+ VKI +GK FV F N +A +A+
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAI 64
Query: 188 QKLNGTTIGKQTVRLSWGRNPANKPFRGDFG 218
+NG TI + V+++ ++ R +FG
Sbjct: 65 NDMNGRTINGRVVKVNGVKSRGGGSGRSNFG 95
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 133 NNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFANRNNAEEAL 187
++++I+VGGL E +R F+ YG I+ VKI +GK FV F N +A +A+
Sbjct: 5 DDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAI 64
Query: 188 QKLNGTTIGKQTVRLSWGRNPANKPFRGDFG 218
+NG TI + V+++ ++ R +FG
Sbjct: 65 NDMNGRTINGRVVKVNGVKSRGGGSGRSNFG 95
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 31 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 90
+++VG LA +V +++LH F + +K K D T + + +GFV F + + S AM+
Sbjct: 11 TLYVGGLAEEVNESILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 91 EMNGVYCSSRPMRIGAATPRK 111
M+G R + + A P K
Sbjct: 70 NMDGAELYGRVLTVNYALPEK 90
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 32 IFVGDLAGDVTDTMLHE--TFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 89
IF+G LA DT L E + +Y + + ++ D +TGR +G+GF+ + D + Q +
Sbjct: 20 IFIGGLA---KDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVI 76
Query: 90 NEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAE 149
E + + + + I P+ + IFVGG+ V+ +
Sbjct: 77 QENH--IINDKQVEIKRTIPKGASQTN--------------DFKTKKIFVGGIPATVSED 120
Query: 150 DLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLN 191
+L+ FS++G +V +I +G GFV F + + L N
Sbjct: 121 ELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGN 168
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 18/197 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRFGDDNERSQAMN 90
+F+G++ T+ + P V++ ++ D N R++G+ FV + ++ A
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN-----ACA 240
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ + SS ++ TP A S ++V + NV E
Sbjct: 241 DFSRQKMSSVGFKLDGITP-----TVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 151 LRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L++ F ++GE+ V +P GK GF+ +A R++A +A+++ I Q + +
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 206 RNPANKPFRGDFGSPWN 222
+ A K + D G +N
Sbjct: 356 KPQAEK--KPDGGYAYN 370
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 18/197 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRFGDDNERSQAMN 90
+F+G++ T+ + P V++ ++ D N R++G+ FV + ++ A
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN-----ACA 240
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ + SS ++ TP A S ++V + NV E
Sbjct: 241 DFSRQKMSSVGFKLDGITP-----TVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 151 LRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L++ F ++GE+ V +P GK GF+ +A R++A +A+++ I Q + +
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 206 RNPANKPFRGDFGSPWN 222
+ A K + D G +N
Sbjct: 356 KPQAEK--KPDGGYAYN 370
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 18/197 (9%)
Query: 32 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFD-ANTGRSKGYGFVRFGDDNERSQAMN 90
+F+G++ T+ + P V++ ++ D N R++G+ FV + ++ A
Sbjct: 186 LFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN-----ACA 240
Query: 91 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXXEAESNNTTIFVGGLDPNVNAED 150
+ + SS ++ TP A S ++V + NV E
Sbjct: 241 DFSRQKMSSVGFKLDGITP-----TVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 151 LRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 205
L++ F ++GE+ V +P GK GF+ +A R++A +A+++ I Q + +
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 206 RNPANKPFRGDFGSPWN 222
+ A K + D G +N
Sbjct: 356 KPQAEK--KPDGGYAYN 370