Miyakogusa Predicted Gene
- Lj1g3v1648780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1648780.1 Non Characterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,28.42,0.000000000002,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.1
(295 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 382 e-106
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 372 e-103
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 368 e-102
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 359 2e-99
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 277 1e-74
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 265 3e-71
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 251 8e-67
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 251 8e-67
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 249 2e-66
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 249 3e-66
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 248 7e-66
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 107 1e-23
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 102 5e-22
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 6e-22
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 6e-22
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 6e-22
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-17
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 84 2e-16
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 84 2e-16
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 84 2e-16
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 84 2e-16
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 84 2e-16
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 82 4e-16
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 82 4e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 82 7e-16
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 80 3e-15
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 79 6e-15
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 77 2e-14
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 77 2e-14
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 76 3e-14
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 8e-14
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 8e-14
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 74 2e-13
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 4e-13
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 68 1e-11
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 3e-11
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 1e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 2e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 59 4e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 59 6e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 59 6e-09
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 1e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 1e-08
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 58 1e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 58 1e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 55 7e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 9e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 52 7e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 49 8e-06
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/256 (77%), Positives = 209/256 (81%), Gaps = 6/256 (2%)
Query: 41 AAMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHW 100
AAMVMPHHMLPP HY PPP YM YH Y VP H H GSSAADNKT+WVGDLHHW
Sbjct: 49 AAMVMPHHMLPPQHYPPPPHHYMAYHHYLHHVP-----HVHHGSSAADNKTLWVGDLHHW 103
Query: 101 MDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTE 160
MDENYLHRCFAS GEI SIKVIRNK T +EGYGFVEF SH TAEKVLQTYAGMLMPNTE
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 161 QPFRLNWATFSTGD-KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDA 219
QPFRLNWATFSTGD KRSDNVPDLSIFVGDLA DVTDTML ETF++KYPSVKAAKVVFDA
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 220 NTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX 279
NTGRSKGYGFVRFGDD ERS+A+NEMNGV+CSSR MRIGAATPRK
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 280 XXEAESNNTTVSFSSF 295
+ +S NTTVSFS+F
Sbjct: 284 QSDTDSTNTTVSFSAF 299
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/251 (77%), Positives = 204/251 (81%), Gaps = 6/251 (2%)
Query: 41 AAMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHW 100
AAMVMPHHMLPP HY PPP YM YH Y VP H H GSSAADNKT+WVGDLHHW
Sbjct: 49 AAMVMPHHMLPPQHYPPPPHHYMAYHHYLHHVP-----HVHHGSSAADNKTLWVGDLHHW 103
Query: 101 MDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTE 160
MDENYLHRCFAS GEI SIKVIRNK T +EGYGFVEF SH TAEKVLQTYAGMLMPNTE
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 161 QPFRLNWATFSTGD-KRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDA 219
QPFRLNWATFSTGD KRSDNVPDLSIFVGDLA DVTDTML ETF++KYPSVKAAKVVFDA
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 220 NTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX 279
NTGRSKGYGFVRFGDD ERS+A+NEMNGV+CSSR MRIGAATPRK
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 280 XXEAESNNTTV 290
+ +S NTT+
Sbjct: 284 QSDTDSTNTTI 294
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFA-SIGEINSIKVIRNKSTGLSEGYGFVEFY 139
H+ S + +I+VGDL + + L F+ + + KV+ + +TG S+GYGFV F
Sbjct: 178 HKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFG 237
Query: 140 SHSTAEKVLQTYAGMLM-----------PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVG 188
K L G+ P ++ + T + + + +IFVG
Sbjct: 238 DDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVG 297
Query: 189 DLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGV 248
L T L + F+ +Y + + K+ KG GFV+F + N +A+ ++NG
Sbjct: 298 GLDPSATAEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT 350
Query: 249 YCSSRPMRI 257
+ +R+
Sbjct: 351 TVGKQTVRL 359
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/260 (70%), Positives = 209/260 (80%), Gaps = 5/260 (1%)
Query: 41 AAMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVP-----SHSHQGSSAADNKTIWVG 95
AAMVMPHHM+PP HYAPPP +H +Q Q P+HVP +H +Q S +NKT+W+G
Sbjct: 43 AAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIG 102
Query: 96 DLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGML 155
DLH WMDE+YLHRCFAS GEI S+KVIRNK +G+SEGYGF EF+SH+TAEKVLQ YAG+L
Sbjct: 103 DLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGIL 162
Query: 156 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 215
MPN +Q FRLNWATFSTGDK SDNV DLSIFVGDLA DVTD++LHETF++ YPSVKAAKV
Sbjct: 163 MPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKV 222
Query: 216 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 275
V+DANTGRSKGYGFVRFGD++ERSQAM +MNGVYCSSRPMRIGAATPRK
Sbjct: 223 VYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSN 282
Query: 276 XXXXXXEAESNNTTVSFSSF 295
EA+S NTTVSFS+
Sbjct: 283 GTSSQSEADSTNTTVSFSAL 302
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/255 (69%), Positives = 205/255 (80%), Gaps = 5/255 (1%)
Query: 41 AAMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVP-----SHSHQGSSAADNKTIWVG 95
AAMVMPHHM+PP HYAPPP +H +Q Q P+HVP +H +Q S +NKT+W+G
Sbjct: 43 AAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIG 102
Query: 96 DLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGML 155
DLH WMDE+YLHRCFAS GEI S+KVIRNK +G+SEGYGF EF+SH+TAEKVLQ YAG+L
Sbjct: 103 DLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGIL 162
Query: 156 MPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 215
MPN +Q FRLNWATFSTGDK SDNV DLSIFVGDLA DVTD++LHETF++ YPSVKAAKV
Sbjct: 163 MPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKV 222
Query: 216 VFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 275
V+DANTGRSKGYGFVRFGD++ERSQAM +MNGVYCSSRPMRIGAATPRK
Sbjct: 223 VYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSN 282
Query: 276 XXXXXXEAESNNTTV 290
EA+S NTT+
Sbjct: 283 GTSSQSEADSTNTTI 297
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 23/190 (12%)
Query: 82 QGSSAADNKTIWVGDLHHWMDENYLHRCFAS-IGEINSIKVIRNKSTGLSEGYGFVEFYS 140
+GS + +I+VGDL + ++ LH F+S + + KV+ + +TG S+GYGFV F
Sbjct: 182 KGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGD 241
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWAT-------------FSTGDKRSDNVPDLSIFV 187
S + + G+ + +P R+ AT T + + + +IFV
Sbjct: 242 ESERSQAMTQMNGVYC--SSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFV 299
Query: 188 GDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
G L +VTD L +TF+ +Y + + K+ KG GFV+F + N +A+ ++NG
Sbjct: 300 GGLDSNVTDEDLKQTFS-QYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNG 352
Query: 248 VYCSSRPMRI 257
+ +R+
Sbjct: 353 TMIGKQTVRL 362
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 80 SHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFY 139
S Q + + N TI+VG L + + L + F+ GEI S+K+ K G GFV+F
Sbjct: 285 SSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGK------GCGFVQFA 338
Query: 140 SHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTML 199
+ + AE+ LQ G ++ +Q RL+W R+ + VG AG + +
Sbjct: 339 NRNNAEEALQKLNGTMI--GKQTVRLSWG-------RNPAYKQFRLDVGSWAGPYFPSPI 389
Query: 200 HETFANKYPS 209
++ + PS
Sbjct: 390 YDGYGYAMPS 399
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/180 (70%), Positives = 149/180 (82%), Gaps = 5/180 (2%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
+TIW+GDLHHWMDE +LH CFA GE+ S KVIRNK TG SEGYGFVEFY+ + AEKVLQ
Sbjct: 116 RTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 150 TYAGMLMPNTEQPFRLNWATFST----GDKRS-DNVPDLSIFVGDLAGDVTDTMLHETFA 204
+ G +MPNT+Q FRLNWATFS G++RS + DLS+FVGDLA DVTD ML ETFA
Sbjct: 176 NFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFA 235
Query: 205 NKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRK 264
+K+ S+K AKVV D+NTGRSKGYGFVRFGD++ER++AM EMNGVYCSSRPMR+G ATP+K
Sbjct: 236 SKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKK 295
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 146/184 (79%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
HQ +S + +T+W+GDL +W+DENYL CF+ GE+ SIK+IRNK TG EGYGF+EF S
Sbjct: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVS 65
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
HS AE+VLQTY G MP TEQ FRLNWA+F G++R D PD SIFVGDLA DVTD +L
Sbjct: 66 HSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQ 125
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
ETF Y SV+ AKVV D NTGRSKGYGFV+F D++ER++AM+EMNGVYCS+RPMRI AA
Sbjct: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
Query: 261 TPRK 264
TP+K
Sbjct: 186 TPKK 189
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 251 bits (640), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
Q +SA + +T+W+GDL +WMDENYL+ CF + GE+ S+KVIRNK T SEGYGF+EF +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTM 198
+TAE+VLQTY G +MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L ETF +Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 259 AAT 261
AT
Sbjct: 231 PAT 233
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 251 bits (640), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
Q +SA + +T+W+GDL +WMDENYL+ CF + GE+ S+KVIRNK T SEGYGF+EF +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTM 198
+TAE+VLQTY G +MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L ETF +Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 259 AAT 261
AT
Sbjct: 231 PAT 233
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
Q +SA + +T+W+GDL +WMDENYL+ CF + GE+ S+KVIRNK T SEGYGF+EF +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTM 198
+TAE+VLQTY G +MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L ETF +Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 259 AAT 261
AT
Sbjct: 231 PAT 233
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
Q +SA + +T+W+GDL +WMDENYL+ CF + GE+ S+KVIRNK T SEGYGF+EF +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDK--RSDNVPDLSIFVGDLAGDVTDTM 198
+TAE+VLQTY G +MPN Q +RLNWATFS G++ R D+ PD +IFVGDLA DVTD +
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L ETF +Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AM EM GV CS+RPMRIG
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 259 AAT 261
AT
Sbjct: 231 PAT 233
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 91 TIWVGDLHHWMDENYLHRCF-ASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
TI+VGDL + + L F A + KV+ ++ TG S+GYGFV F + +
Sbjct: 156 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
Query: 150 TYAGMLMPNTEQPFRLNWAT-------------FSTGDKRSDNVPD-LSIFVGDLAGDVT 195
G+L + +P R+ AT ++ +S+N P+ +IFVG+L +VT
Sbjct: 216 EMQGVLC--STRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVT 273
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPM 255
D L + F +Y + K+ K GFV+F D + +A+ +NG + +
Sbjct: 274 DDHLRQVFT-QYGELVHVKIP------SGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNV 326
Query: 256 RI 257
R+
Sbjct: 327 RL 328
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 148/209 (70%), Gaps = 2/209 (0%)
Query: 84 SSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHST 143
SSA + KT+W+GDL +WMDENYL+ CF+ GE+ S+KVIRNK T SEGYGF+EF S +
Sbjct: 68 SSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAG 127
Query: 144 AEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETF 203
AE+VLQT+ G +MPN Q FRLNWATFS+G+KR D+ PD +IFVGDLA DV+D L E F
Sbjct: 128 AERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVF 187
Query: 204 ANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
+Y SVK AKVV D TGR+KGYGFVRF D++E+ +AM EM GV CS+RPMRIG A+ +
Sbjct: 188 RTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNK 247
Query: 264 KXXXXXXXXXXXXXXXXXEAES--NNTTV 290
+ E+ NNTT+
Sbjct: 248 NLGTQTSKASYQNPQGGAQNENDPNNTTI 276
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 91 TIWVGDLHHWMDENYLHRCFAS-IGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
TI+VGDL + +++L F + + KV+ +++TG ++GYGFV F S + +
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 227
Query: 150 TYAGMLMPNTEQPFRL------NWATFST--------GDKRSDNVPD-LSIFVGDLAGDV 194
G+L + +P R+ N T ++ G +++N P+ +IFVG+L +V
Sbjct: 228 EMQGVLC--STRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNV 285
Query: 195 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 254
TD L + F +Y + K+ K GFV+F D + +A+ +NG +
Sbjct: 286 TDEHLKQVFT-QYGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLNGTLLGGQN 338
Query: 255 MRI 257
+R+
Sbjct: 339 VRL 341
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 83 GSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHS 142
G ++ ++++VG++H + E L F+S G + K+IR + + YGFV+++ S
Sbjct: 39 GFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRS 94
Query: 143 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHET 202
+A + T G + Q ++NWA T +R D IFVGDL+ +VTD L+
Sbjct: 95 SAAIAIVTLNGRNI--FGQSIKVNWAY--TRGQREDTSGHFHIFVGDLSPEVTDATLYAC 150
Query: 203 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
F+ Y S A+V++D TGRS+G+GFV F + E A+N++ G + SR +R AT
Sbjct: 151 FS-AYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWAT 208
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 9/172 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQ 149
++++VG++H + E L FA G + K+ R + + YGF+ ++ +A +
Sbjct: 62 RSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 117
Query: 150 TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPS 209
T G + QP ++NWA +++G +R D +IFVGDL+ +VTD L F+ Y S
Sbjct: 118 TLNGRHLFG--QPIKVNWA-YASG-QREDTSGHYNIFVGDLSPEVTDATLFACFS-VYQS 172
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
A+V++D TGRS+G+GFV F + A+N++ G + SR +R AT
Sbjct: 173 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 224
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 37/211 (17%)
Query: 66 HQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNK 125
H + Q + ++ S Q + + I+VGDL + + L CF+ + +V+ ++
Sbjct: 123 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQ 182
Query: 126 STGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTG------------ 173
TG S G+GFV F S A+ + G + + + R NWAT G
Sbjct: 183 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQ--IRCNWATKGAGGIEEKQNSDSKS 240
Query: 174 -------------DKRSDNVPD-----LSIFVGDLAGDVTDTMLHETFANKYPSVKAAKV 215
+ S++VP+ +++VG+L + T LH F A V
Sbjct: 241 VVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHF-----HALGAGV 295
Query: 216 VFDANTGRSKGYGFVRFGDDNERSQAMNEMN 246
+ + R KG+GFVR+ E + A+ N
Sbjct: 296 IEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 326
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 83 GSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHS 142
G A+ ++++VG++H + + L F S G + K+IR + + YGFV+++ +
Sbjct: 37 GFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRA 92
Query: 143 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHET 202
+A + T G + Q ++NWA ++ R D ++FVGDL+ +VTD L
Sbjct: 93 SAALAIMTLHGRQL--YGQALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFAC 148
Query: 203 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
F+ Y + A+V++D TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 149 FS-VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 206
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 83 GSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHS 142
G A+ ++++VG++H + + L F S G + K+IR + + YGFV+++ +
Sbjct: 53 GFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRA 108
Query: 143 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHET 202
+A + T G + Q ++NWA ++ R D ++FVGDL+ +VTD L
Sbjct: 109 SAALAIMTLHGRQL--YGQALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFAC 164
Query: 203 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
F+ Y + A+V++D TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 165 FS-VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 83 GSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHS 142
G A+ ++++VG++H + + L F S G + K+IR + + YGFV+++ +
Sbjct: 53 GFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRA 108
Query: 143 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHET 202
+A + T G + Q ++NWA ++ R D ++FVGDL+ +VTD L
Sbjct: 109 SAALAIMTLHGRQL--YGQALKVNWAYANS--SREDTSGHFNVFVGDLSPEVTDATLFAC 164
Query: 203 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAAT 261
F+ Y + A+V++D TGRSKGYGFV F D + A+N+M G + +R +R AT
Sbjct: 165 FS-VYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
+ T +VG+L + E L F G + ++ V +++ T +GYGFVEF S A+ +
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
+ + + +P R+N A+ DK+S +V ++F+G+L DV + +L++TF+
Sbjct: 84 KVLNMIKL--YGKPIRVNKAS---QDKKSLDV-GANLFIGNLDPDVDEKLLYDTFSAFGV 137
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
V K++ D +TG S+G+GF+ + A+ MNG Y +R + + A
Sbjct: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 95/168 (56%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL H + ++ L+ F IG++ S+++ R+ ++ S GYG+V F + A K +
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
P +P R+ ++ ++S +IF+ +L + L++TF+ + ++
Sbjct: 85 LN--FTPLNNKPIRIMYSHRDPSVRKSGAA---NIFIKNLDRAIDHKALYDTFS-IFGNI 138
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ K+ DA +G SKGYGFV+F ++ A++++NG+ + +P+ +G
Sbjct: 139 LSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 85 SAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA 144
S A ++V +L + ++ L F G I S V+R+ G S+ +GFV F + A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAA 256
Query: 145 EKVLQT-----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGD 193
+ ++ Y G + E+ L + + D ++++ +L
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDS 316
Query: 194 VTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSR 253
VTD L E F+ ++ +V + K++ D G S+G GFV F E ++A+ EMNG + +
Sbjct: 317 VTDEKLSELFS-EFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGK 374
Query: 254 PMRIGAATPRK 264
P+ + A ++
Sbjct: 375 PLYVAPAQKKE 385
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
++ ++VG+ +D L F G + +VI N+ T LS G+GFV + AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 148 LQTYAG-----------MLMPNTEQPFRLNWA--TFSTGDKRSDNVPDLSIFVGDLAGDV 194
++ + G P +P R A TF P L I+V +LA +V
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFE---------PVLRIYVANLAWEV 217
Query: 195 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRP 254
++ L + F+ ++ + +A+VV+D TGRS+G+GFV D+ E + A+ ++G R
Sbjct: 218 DNSRLEQVFS-EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRT 276
Query: 255 MRIGAATPR 263
+R+ A R
Sbjct: 277 IRVSVAEDR 285
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 78 SHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVE 137
S +Q + + ++ ++VG+L + + L + F G + S++++ + T S G+ FV
Sbjct: 96 SDLNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVT 155
Query: 138 FYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSD---------NVPDLSIFVG 188
+ AE+ ++ + G + + ++N+ KR + P I+ G
Sbjct: 156 MGNVEDAEEAIRMFDGTTVGG--RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAG 212
Query: 189 DLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGV 248
+L D+T L + FA K P + +AKVV++ N G+S+GYGFV F + A++ MNGV
Sbjct: 213 NLGWDMTSQYLRKAFA-KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV 271
Query: 249 YCSSRPMRIGAAT 261
RP+R+ A
Sbjct: 272 EVQGRPLRLKLAV 284
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 78 SHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVE 137
S +Q + + ++ ++VG+L + + L + F G + S++++ + T S G+ FV
Sbjct: 96 SDLNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVT 155
Query: 138 FYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSD---------NVPDLSIFVG 188
+ AE+ ++ + G + + ++N+ KR + P I+ G
Sbjct: 156 MGNVEDAEEAIRMFDGTTVGG--RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAG 212
Query: 189 DLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGV 248
+L D+T L + FA K P + +AKVV++ N G+S+GYGFV F + A++ MNGV
Sbjct: 213 NLGWDMTSQYLRKAFA-KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGV 271
Query: 249 YCSSRPMRIGAAT 261
RP+R+ A
Sbjct: 272 EVQGRPLRLKLAV 284
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 105/200 (52%), Gaps = 11/200 (5%)
Query: 63 MPYHQYQQQVPMHVPSHSHQGSSAADNK----TIWVGDLHHWMDENYLHRCFASIGEINS 118
M Q Q Q P VP+ S+ N+ +++VGDL ++++ L+ F +G++ S
Sbjct: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
Query: 119 IKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSD 178
++V R+ +T S GYG+V F + A + L P + R+ ++ ++S
Sbjct: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLN--FTPMNNKSIRVMYSHRDPSSRKSG 118
Query: 179 NVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 238
+IF+ +L + LH+TF++ + + + K+ D +G+SKGYGFV+F ++
Sbjct: 119 TA---NIFIKNLDKTIDHKALHDTFSS-FGQIMSCKIATDG-SGQSKGYGFVQFEAEDSA 173
Query: 239 SQAMNEMNGVYCSSRPMRIG 258
A++++NG+ + + + +G
Sbjct: 174 QNAIDKLNGMLINDKQVFVG 193
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L E+ L F + G I S ++R+ + G S+ +GFV F + A K ++
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRS--DNVPDLSIFVGDLAGDVTDTM 198
Y G +E+ L F K S D L++++ +L +TD
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELK-GRFEQTVKESVVDKFQGLNLYLKNLDDSITDEK 330
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
L E F+ ++ ++ + K++ D N G S+G GFV F E S+A+ EMNG S+P+ +
Sbjct: 331 LKEMFS-EFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 388
Query: 259 AA 260
A
Sbjct: 389 VA 390
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N +++VGDL ++E L F+ + ++ SI+V R+++ S GY +V F + A
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
+ P E+P R+ FS D ++F+ +L + LH+TFA P
Sbjct: 89 ELLN--FTPLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP 143
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
V + KV D N G+SKGYGFV+F ++ A+ +++G+ + + + +G
Sbjct: 144 -VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA------- 144
++V ++ + L + F G I S V+++ + G S +GFV F S +A
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 145 -------EKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDT 197
+KVL + G E+ L R + + ++++ +L D +
Sbjct: 270 NGTAINDDKVL--FVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 198 MLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
L + F+ ++ +V + +V+ D++ G SKG GFV F E ++A+NEMNG +P+ +
Sbjct: 328 KLKDLFS-EFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Query: 258 GAATPRK 264
A ++
Sbjct: 386 AVAQRKE 392
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N +++VGDL ++E L F+ + ++ SI+V R+++ S GY +V F + A
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 149 QTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYP 208
+ P E+P R+ FS D ++F+ +L + LH+TFA P
Sbjct: 89 ELLN--FTPLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP 143
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
V + KV D N G+SKGYGFV+F ++ A+ +++G+ + + + +G
Sbjct: 144 -VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTA------- 144
++V ++ + L + F G I S V+++ + G S +GFV F S +A
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 145 -------EKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDT 197
+KVL + G E+ L R + + ++++ +L D +
Sbjct: 270 NGTAINDDKVL--FVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 198 MLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRI 257
L + F+ ++ +V + +V+ D++ G SKG GFV F E ++A+NEMNG +P+ +
Sbjct: 328 KLKDLFS-EFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Query: 258 GAATPRK 264
A ++
Sbjct: 386 AVAQRKE 392
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 30/192 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+++ I+VG+L +D L + F G + +VI N+ T S G+GFV + E+
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 147 VLQTYAGMLM---------------PNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLA 191
+ ++G + P QP TF++G L +VG+L
Sbjct: 179 AVNKFSGFELDGRLLTVNKAAPRGTPRLRQP-----RTFNSG---------LRAYVGNLP 224
Query: 192 GDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCS 251
DV ++ L + F+ ++ V++A+VV+D TGRS+G+GFV ++ E + A+ ++G +
Sbjct: 225 WDVDNSSLEQLFS-EHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFN 283
Query: 252 SRPMRIGAATPR 263
R +R+ A R
Sbjct: 284 GRAIRVNVAEER 295
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
+N +++VGDL +++ L+ F+ I + S++V R++ T S GYG+V + + A
Sbjct: 23 ENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANA 82
Query: 148 LQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKY 207
++ +P +P R+ FS D ++F+ +L + + LHETF+ +
Sbjct: 83 MENLN--YVPLNGKPIRI---MFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFS-VF 136
Query: 208 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+V + KV D+N G SKG+GFV+F +D A+ +++G+ + + + +G
Sbjct: 137 GNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVG 186
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 15/185 (8%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L L + F S G I S+ +++ G S+ +GFV F S +A ++
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 151 -----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTML 199
+ G +E+ L KR + ++++ ++ + + L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 200 HETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGA 259
E F+ ++ ++ + KV+ DA GRSKG GFV F E S+A++EMNG +P+ +
Sbjct: 321 KELFS-EFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSV 378
Query: 260 ATPRK 264
A ++
Sbjct: 379 AQRKE 383
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDL + ++ L+ F +G++ S++V R+ +T S GYG+V + + A + L
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
P +P R+ ++ ++S +IF+ +L + LH+TF++ + ++
Sbjct: 95 LN--FTPLNNRPIRIMYSHRDPSIRKSGQG---NIFIKNLDKAIDHKALHDTFSS-FGNI 148
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
+ KV D +G+SKGYGFV+F + +A+ ++NG+ + + + +G
Sbjct: 149 LSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVG 195
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L ++ L + F G I S V+R+ G S+ +GFV F S A + ++
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEAL 273
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
Y G +E+ L + + +D +++V +L + D L
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 333
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
E F++ Y ++ + KV+ D N G S+G GFV F E S+A+ EMNG +S+P+ + A
Sbjct: 334 ELFSS-YGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 391
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 84 SSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHST 143
+++ D ++VG+L M + L FA G + S++++ ++ T S G+ FV S
Sbjct: 103 TTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEE 162
Query: 144 AEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKR---SDNVPDL---------SIFVGDLA 191
A++ ++ + G + + ++N+ G +R V + I+ G+L
Sbjct: 163 AKEAIRMFDGSQVGG--RSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLG 220
Query: 192 GDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCS 251
+ L + F ++ P + AK++++ + GRS+G+GFV F A+N MNGV
Sbjct: 221 WGMNSQDLRDAF-DEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQ 279
Query: 252 SRPMRIGAATPR 263
RP+R+ A R
Sbjct: 280 GRPLRLNLAAAR 291
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 23/173 (13%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
++ ++VG+ +D L F G + +VI N+ T LS G+GFV + AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 148 LQTYAG-----------MLMPNTEQPFRLNWA--TFSTGDKRSDNVPDLSIFVGDLAGDV 194
++ + G P +P R A TF P L I+V +LA +V
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFE---------PVLRIYVANLAWEV 217
Query: 195 TDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
++ L + F+ ++ + +A+VV+D TGRS+G+GFV D+ E + A+ ++G
Sbjct: 218 DNSRLEQVFS-EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
+++VGDLH + ++ LH F+ + S+++ R+ S+G S YG+V F S A + ++
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ + R+ W+ D R + + +FV +LA + ++ L + F K+ ++
Sbjct: 71 KNHSTL--NGKAIRVMWSRRDP-DARKSCIGN--VFVKNLAESIDNSGLEDMF-KKFGNI 124
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
++KVV + G+SKGYGFV+F + + A+ +NG + + +G
Sbjct: 125 LSSKVVMSED-GKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVG 171
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L +D + L F G I S KV+ ++ G S+GYGFV+F + +A ++
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERL 158
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDL---SIFVGDLAGDVTDTMLHETFANKYP 208
G L+ + + + F R + PD ++++ +L D+++T+L E F++ +
Sbjct: 159 NGYLVGDKQ----IYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS-FG 213
Query: 209 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
+ + V D+N G SKG+GFV F + + +AM MNG+ S+ + + A +
Sbjct: 214 KIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKK 267
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 84 SSAADNK--TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSH 141
SS D + +++ +L + E L F+S G+I S+ V ++ S G+S+G+GFV F +
Sbjct: 181 SSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNP 239
Query: 142 STAEKVLQTYAGMLMPNT--------EQPFRLNWATFSTGDKRSDNVPDL---SIFVGDL 190
A++ ++T G+ + + ++ R +KR + V +I+V ++
Sbjct: 240 EDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNI 299
Query: 191 AGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC 250
+V+D L + F+ ++ +AK++ D + G SKG+GFV F E ++A+N +G
Sbjct: 300 DDNVSDEGLRDHFS-VCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMF 357
Query: 251 SSRPMRIGAATPRK 264
+P+ + A ++
Sbjct: 358 HGKPLYVSLAQRKE 371
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N+ ++VG+L +D L F + G++ ++VI +KSTG S G+GFV S + E
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 149 QTYAGMLMPNTE--------QPFRLNWATFSTGDKRSDNVP-----------DLSIFVGD 189
Q G ++ E P R + F + + P D + VG+
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
LA V + L F + V AKV++D +GRS+G+GFV F +E A+ ++G
Sbjct: 203 LAWGVDNLALESLFGEQG-QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 250 CSSRPMRIGAATPR 263
+ R +R+ A R
Sbjct: 262 LNGRAIRVSPADSR 275
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 169 TFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 228
TF GD P+ +FVG+L V L E F N V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 229 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 262
FV E A ++NG R +R+ A P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 89 NKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVL 148
N+ ++VG+L +D L F + G++ ++VI +KSTG S G+GFV S + E
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 149 QTYAGMLMPNTE--------QPFRLNWATFSTGDKRSDNVP-----------DLSIFVGD 189
Q G ++ E P R + F + + P D + VG+
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 190 LAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVY 249
LA V + L F + V AKV++D +GRS+G+GFV F +E A+ ++G
Sbjct: 203 LAWGVDNLALESLFGEQG-QVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 250 CSSRPMRIGAATPR 263
+ R +R+ A R
Sbjct: 262 LNGRAIRVSPADSR 275
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 169 TFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYG 228
TF GD P+ +FVG+L V L E F N V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 229 FVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATP 262
FV E A ++NG R +R+ A P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 87 ADNKT-IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAE 145
D +T ++ G+L + +D L G I+V+ ++ TG S G+ FV
Sbjct: 109 VDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCN 168
Query: 146 KVLQTYAGM-LMPNTEQPFRLNWATFSTGDKRSDNVP-----DLSIFVGDLAGDVTDTML 199
V+Q G M T R+N++ DK P + +FVG+LA VT L
Sbjct: 169 AVIQNLDGKEFMGRT---LRVNFS-----DKPKPKEPLYPETEYKLFVGNLAWTVTSESL 220
Query: 200 HETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGA 259
+ F ++ +V A+V+FD TG+S+GYGFV + +E A+ M+ V R +R+
Sbjct: 221 TQAF-QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSL 279
Query: 260 ATPRK 264
A ++
Sbjct: 280 AQGKR 284
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 91 TIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT 150
T++VGDLH + + L++ F+ + S +V ++ +TG S YG+V SH A + ++
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 151 YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSV 210
+ + R+ W + ++S ++FV +LA + + LH+ F KY ++
Sbjct: 76 KNHSSLNG--KVIRVMWLSRDADARKSGKG---NVFVKNLAASIDNVGLHDLF-QKYGNI 129
Query: 211 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIG 258
++K+ + G+SKG+G+++F + + A+ +MNG + + +G
Sbjct: 130 LSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVG 176
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L +D LH F G I S K+ R++ G S+G+G+++F S +A +Q
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESANVAIQKM 163
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDNVPDL-----SIFVGDLAGDVTDTMLHETFANK 206
G +T + ++ F +RS +PDL +++V +L VT+ L E F++
Sbjct: 164 NG----STVRDKQIYVGKFIRKSERS--LPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS- 216
Query: 207 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPR 263
+ + + + D N G+SKG+GFV + ++ +AM M+G S+ + + A +
Sbjct: 217 FGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK 272
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + E +L F+S G+I S+ I+ G S+G+GFV + S A + ++
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSL-AIKKDENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 151 ----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
Y E+ L+ G K + +I+V ++ V D L
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGS----NIYVKNIDTSVGDEELR 310
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ F+ V +AKV+ D + G SKG+GFV F E ++M+ NG +P+ + A
Sbjct: 311 DHFS-ACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFA 368
Query: 261 TPRK 264
++
Sbjct: 369 QKKE 372
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 182 DLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 241
D +F GDL +V D +L + F ++PS A+VV D TG++KGYGF+ F + + + A
Sbjct: 131 DYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 242 MNEMNGVYCSSRPMRI 257
+ EMNG Y +RP+++
Sbjct: 190 LKEMNGKYVGNRPIKL 205
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 15/185 (8%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQT- 150
++V +L + L + F++ G I S ++++++ G S+ +GFV F S +A ++
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 151 -----------YAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTML 199
Y G E+ L KR + + ++++ +L + D L
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 200 HETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGA 259
E F+ ++ ++ + KV+FDA+ G SKG+GFV F E S+A+N M+G +P+ +
Sbjct: 226 KEMFS-EFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVV 283
Query: 260 ATPRK 264
A ++
Sbjct: 284 AQRKE 288
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 9/158 (5%)
Query: 92 IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTY 151
++V +L +D LH FA+ G + S KV + S G S GYGFV++ +H +A+ ++
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 152 AGMLMPNTEQPFRLNWATFSTGDKRSDN-VPDLS-IFVGDLAGDVTDTMLHETFANKYPS 209
GML+ + ++ F F +RS+N P + ++V +L TD L + F+ Y
Sbjct: 76 DGMLIKD-KKAF---VGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFST-YGV 130
Query: 210 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG 247
+ +A ++ D N G SK +GFV F + + A+ ++NG
Sbjct: 131 ITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKLNG 167
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 66 HQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNK 125
H+++QQ H S S G A+ K I++G L + F GEI +++++
Sbjct: 25 HEHEQQ---HHNSQSLTGDGASPGK-IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDR 80
Query: 126 STGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSI 185
TG G+GF+ + S +KV++ + E + + D R+ I
Sbjct: 81 KTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKK-----I 135
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG + +VT+ + F +Y VK +++ D +T RS+G+GFV F + ++
Sbjct: 136 FVGGIPSNVTEDEFRDFFT-RYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMG 194
Query: 246 NGVYCSSRPMRIGAATPRK 264
N + + + I A P+K
Sbjct: 195 NKIEFAGTQVEIKKAEPKK 213
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 18/204 (8%)
Query: 68 YQQQVPMHVPSHSHQGSSAADN----KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIR 123
+Q+++P V + +++ +N ++VG + ++ E+ +H F G I I +
Sbjct: 194 HQEEMPQSVELANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMT 253
Query: 124 NKSTGLSEGYGFVEFYSHSTAEKVLQT----YAGMLMPNTEQPFRLNWAT-FSTGDKRSD 178
TG G + F + + A++ L G+ + QP + AT F+ K
Sbjct: 254 FPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKI--QPCKATQATRFTPEMKEGY 311
Query: 179 NVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 238
N I+VG L+ ++T+ L + F+N +VKA ++ D TG +GY V FGD
Sbjct: 312 N----RIYVGSLSWEITEEELRKFFSN--CNVKAIRLGMDKETGEFRGYAHVDFGDSQSL 365
Query: 239 SQAMNEMNGVYCSSRPMRIGAATP 262
A+ ++ RP+RI A P
Sbjct: 366 KTAL-ALDQSVLFGRPVRISCAVP 388
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D+ +++G + +E L F++ GE+ ++++++TG + G+GFV F + A+
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 147 VLQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS--IFVGDLAGDVT 195
V+Q A +P +Q N + ++G P + IFVG LA VT
Sbjct: 63 VVQEKHNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVT 118
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEMNG 247
++ + F +++ ++ V++D NT R +G+GF+ + + Q + +E+NG
Sbjct: 119 ESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG 173
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D+ +++G + +E L F++ GE+ ++++++TG + G+GFV F + A+
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 147 VLQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLS--IFVGDLAGDVT 195
V+Q A +P +Q N + ++G P + IFVG LA VT
Sbjct: 63 VVQEKHNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVT 118
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM----NEMNG 247
++ + F +++ ++ V++D NT R +G+GF+ + + Q + +E+NG
Sbjct: 119 ESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNG 173
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G + +E+ L + F + G++ ++++++TG + G+GFV F S AE+V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 148 LQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ A +P +Q + S G + IFVG LA VT++
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
F +++ ++ V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 122 FKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVEKVLHKTFHELNG 173
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G + +E+ L + F + G++ ++++++TG + G+GFV F S AE+V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 148 LQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ A +P +Q + S G + IFVG LA VT++
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
F +++ ++ V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 122 FKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVEKVLHKTFHELNG 173
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +++G + +E+ L + F + G++ ++++++TG + G+GFV F S AE+V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 148 LQ---------TYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ A +P +Q + S G + IFVG LA VT++
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
F +++ ++ V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 122 FKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVEKVLHKTFHELNG 173
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 81 HQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
H G A+ K I++G L + F GEI +++++ TG G+GF+ +
Sbjct: 10 HSGDGASPGK-IFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYAD 68
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
S ++V+Q ++ + + + T G ++++ IFVG + V++ L
Sbjct: 69 ASVVDQVIQ--ENHIINDKQVEIK---RTIPKGASQTNDFKTKKIFVGGIPATVSEDEL- 122
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
+ F +K+ +V +++ D T RS+G+GFV F D + + N + + I A
Sbjct: 123 KIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKA 182
Query: 261 TPRK 264
P+K
Sbjct: 183 EPKK 186
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++++ S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 148 LQTYAGMLM--PNTEQP-------FRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ +L+ P +P + N T + G D ++VG+L ++T++
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRI 257
L E F + +V+ ++ D TG KG+GF++F E ++A +NG + + R +++
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++++ S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 148 LQTYAGMLM--PNTEQP-------FRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ +L+ P +P + N T + G D ++VG+L ++T++
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRI 257
L E F + +V+ ++ D TG KG+GF++F E ++A +NG + + R +++
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++++ S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 148 LQTYAGMLM--PNTEQP-------FRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTM 198
+ +L+ P +P + N T + G D ++VG+L ++T++
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 199 LHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRI 257
L E F + +V+ ++ D TG KG+GF++F E ++A +NG + + R +++
Sbjct: 333 LREIF-EPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L FA+ GE+ ++R+++TG + G+GFV F + AE+
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER 62
Query: 147 VL---------QTYAGMLMPNTEQPFRLNWATFST----GDKRSDNVPDLSIFVGDLAGD 193
V+ A +P +Q +N T S G R+ IFVG L
Sbjct: 63 VIIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSVQGSPGPGRTK-----KIFVGGLPST 116
Query: 194 VTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
+T++ F +++ ++ V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 117 ITESDFKMYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVDRVLYKTFHELNG 173
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 87 ADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEK 146
+D +++G + DE L FA+ GE+ ++R+++TG + G+GFV F + AE+
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER 62
Query: 147 VL---------QTYAGMLMPNTEQPFRLNWATFST----GDKRSDNVPDLSIFVGDLAGD 193
V+ A +P +Q +N T S G R+ IFVG L
Sbjct: 63 VIIDKHIIDGRTVEAKKAVPRDDQQ-NINRQTGSVQGSPGPGRTK-----KIFVGGLPST 116
Query: 194 VTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS------QAMNEMNG 247
+T++ F +++ ++ V++D NT R +G+GF+ + D+E + + +E+NG
Sbjct: 117 ITESDFKMYF-DQFGTITDVVVMYDHNTQRPRGFGFITY--DSEEAVDRVLYKTFHELNG 173
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 77 PSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFV 136
P HS G+ A ++VG + E + F G + + +I+++ TG +G F+
Sbjct: 79 PDHSDGGNFA----KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFI 134
Query: 137 EFYSHSTAEKVLQTYAGM-LMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVT 195
++ + A++ ++ +P P ++ +A G++ + +FVG L +
Sbjct: 135 KYATSEEADQAIRALHNRHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQAS 191
Query: 196 DTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYC---SS 252
+ E F+ KY ++ ++ D + +S+G GFV++ + A+N +NG+Y
Sbjct: 192 VKEVEEVFS-KYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCE 249
Query: 253 RPMRIGAATPRK 264
+P+ + A P++
Sbjct: 250 QPLIVRFADPKR 261
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 85 SAADNKT----IWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS 140
S AD T ++V L L F+S G+++ VI +K+TG S+GYGFV Y
Sbjct: 67 SVADRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFV-VYR 125
Query: 141 HSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLH 200
H V + P+ + R+ + +V +FVG++ +V+ L
Sbjct: 126 H-----VDGAVLALKEPSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLL 180
Query: 201 ETFANKYPSVKAAKVVFDANTGRSKGYGFVRF----GDDNERSQAMNEMNG--VYC 250
F+ KY ++ + FD +G+++G+ F + G N +++M ++G V C
Sbjct: 181 SEFS-KYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVIC 235
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G ++ +T L E F+ +Y V AK++ D +TGRS+G+GF+ F E S A+
Sbjct: 42 LFIGGVSYSTDETGLREAFS-RYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+ R +R+ AT R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G ++ +T L E F+ +Y V AK++ D +TGRS+G+GF+ F E S A+
Sbjct: 42 LFIGGVSYSTDETGLREAFS-RYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+ R +R+ AT R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 88 DNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKV 147
D +T++ + E ++ F+ G++ +++I ++++ S+G G++EFY +
Sbjct: 200 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 259
Query: 148 LQTYAGMLMPN------TEQPFRLNWATFSTGDKRSD--NVPDLSIFVGDLAGDVTDTML 199
+ +L+ +E L + S+G D ++VG+L ++T+ L
Sbjct: 260 IALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 200 HETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNG-VYCSSRPMRIG 258
E F + ++ ++ D TG KG+GFV+F E ++A +NG + + R +++
Sbjct: 320 REIF-EPFGQIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVS 377
Query: 259 AAT 261
+ T
Sbjct: 378 SVT 380
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+ L+ + +T+L +TF ++ + KV+ + TG SKGYGFVRF + + A E
Sbjct: 35 LFIAGLSYNTNETVLRDTF-EQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 245 MNGVYCSSRPMRIGAA 260
++G R +R+G A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 9/178 (5%)
Query: 90 KTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYS----HSTAE 145
+ ++VG++ + + L + G + +V+ +K + S + FV + ++ AE
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 146 KVLQTYAG---MLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHET 202
K+ T G + + TE+P G+ + P ++VG+LA +VT L +
Sbjct: 120 KLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSP-YKVYVGNLAKNVTSDSLKKF 178
Query: 203 FANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAA 260
F+ K ++ +AKV T +S G+GFV F D + A++ N + +R+ A
Sbjct: 179 FSEKGNAL-SAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
++VG ++ D L E+FA +Y V A+V+ D GRSKG+GFV F E S A+
Sbjct: 42 LYVGGISYSTDDAGLRESFA-RYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+ R +R+ A R
Sbjct: 101 MDNQELHGRTVRVNYAQER 119
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+FVG L+ V + L + F++ + V ++V+D ++GR++G+GFV F +++ A +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 245 MNGVYCSSRPMRIGAATPR 263
M+G RP+RI A +
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 183 LSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 242
+FVG L+ T+ L + F+N Y V AKV+ D + +SKGYGFV F +E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSN-YGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 243 NEMNGVYCSSRPMRIGAATP 262
EMN + R + + A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 184 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 243
S+ V +L+ D + LHE F + SV V D NTG S+G+GFV F + + +A+N
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 244 EMNGVYCSSRPMRIGAATPR 263
++NG + +++ ATPR
Sbjct: 259 KLNGYGYDNLILKVEWATPR 278
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+F+G L+ +V D L + F Y V A+V+ D TGRS+G+GFV F + + A++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTT-YGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 95
Query: 245 MNGVYCSSRPMRIGAATPRK 264
M+G + R +R+ A R+
Sbjct: 96 MDGQDLNGRNIRVSYANDRQ 115
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 180 VPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 239
P +F+G ++ + L E F+ +Y V A+++ D TGRS+G+GF+ F E S
Sbjct: 39 APTTKLFIGGVSYSTDENSLREAFS-RYGEVLDARIIMDRETGRSRGFGFITFNSVEEAS 97
Query: 240 QAMNEMNGVYCSSRPMRIGAATPR 263
A+ ++G R +R+ A R
Sbjct: 98 SAIQALDGQDLHGRRVRVNYANER 121
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 186 FVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEM 245
FVG LA L + F+ K+ + +KV+ D TGRS+G+GFV F ++ A+ EM
Sbjct: 11 FVGGLAWATDSQALEQAFS-KFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEM 69
Query: 246 NGVYCSSRPMRIGAA 260
NG R + + A
Sbjct: 70 NGQDIDGRNITVNEA 84
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+FVG LA + L E F KY + A ++ D TGRSKGYGFV F D + +A E
Sbjct: 20 VFVGGLAWETPKDTLREHF-EKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 185 IFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNE 244
+FVG LA + L E F KY + A ++ D TGRSKGYGFV F D + +A E
Sbjct: 20 VFVGGLAWETPKDTLREHF-EKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 184 SIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMN 243
+++VG LA +V +++LH F + +K K D T + + +GFV F + + S AM+
Sbjct: 11 TLYVGGLAEEVNESILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 244 EMNGVYCSSRPMRIGAATPRK 264
M+G R + + A P K
Sbjct: 70 NMDGAELYGRVLTVNYALPEK 90