Miyakogusa Predicted Gene

Lj1g3v1625460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1625460.1 Non Characterized Hit- tr|I3S9I2|I3S9I2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.12,0,SUBFAMILY
NOT NAMED,NULL; SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING
PROTEIN,Protein of unknown fun,CUFF.27582.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100940.1 | seven transmembrane domain protein | HC | chr3...   458   e-129

>Medtr3g100940.1 | seven transmembrane domain protein | HC |
           chr3:46447345-46450791 | 20130731
          Length = 228

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/227 (98%), Positives = 223/227 (98%)

Query: 1   MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIKTAVVYLATALVKLICLATFLKVS 60
           MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIK AVVYLATALVKLICLATFLKVS
Sbjct: 1   MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIKAAVVYLATALVKLICLATFLKVS 60

Query: 61  ESDSFDPYQEILKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLA 120
           ESDSFDPYQE LKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLA
Sbjct: 61  ESDSFDPYQEFLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLA 120

Query: 121 PLWVGARGLEFTWEYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYLCAGIV 180
           PLWVGARGLEFTWEYILQGLEANANLVLSISLA LGSLMWLRKNKPKTLIPIIYLCAGIV
Sbjct: 121 PLWVGARGLEFTWEYILQGLEANANLVLSISLAGLGSLMWLRKNKPKTLIPIIYLCAGIV 180

Query: 181 ATMPSITSYLRRGLGWHLPKVVGFELFTSLVMAFISWQLFAVCQRPS 227
           ATMPSITSYLRRGLGWHLPKVVGFELFTSLVMAFISWQLFA CQRPS
Sbjct: 181 ATMPSITSYLRRGLGWHLPKVVGFELFTSLVMAFISWQLFAACQRPS 227