Miyakogusa Predicted Gene

Lj1g3v1583620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1583620.1 Non Characterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,RING/U-box,NULL; U-box,U box domain; Modified RING
finger domain,U box domain; no description,Zinc
f,NODE_51503_length_588_cov_139.940475.path1.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g013690.1 | ubiquitin conjugation factor E4, putative | HC...   198   7e-52

>Medtr6g013690.1 | ubiquitin conjugation factor E4, putative | HC |
            chr6:4310064-4300709 | 20130731
          Length = 1047

 Score =  198 bits (504), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/110 (88%), Positives = 105/110 (95%), Gaps = 1/110 (0%)

Query: 1    MDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDASDPFNRSHLTA 60
            M+AE TLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD+SDPFNRSHLTA
Sbjct: 939  MEAEDTLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTA 998

Query: 61   DMLIPDVELKARIEEFVRSQEMKKHGEGLSIQSSSKATIQTTNGEKMLID 110
            DMLIPDVELKA+IEEF+RSQEMKKHGE ++IQ SSKATIQTT+  +MLID
Sbjct: 999  DMLIPDVELKAKIEEFIRSQEMKKHGESINIQ-SSKATIQTTDTSEMLID 1047