Miyakogusa Predicted Gene

Lj1g3v1548780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1548780.1 Non Characterized Hit- tr|J3LAQ7|J3LAQ7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,48.65,0.000000000007,seg,NULL; TPR-like,NULL; TPR_11,NULL;
TPR_9,NULL; Tetratricopeptide repeats,Tetratricopeptide
repeat,CUFF.27502.1
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100100.1 | TPR domain protein | HC | chr3:45987094-459897...   176   2e-44
Medtr8g068400.1 | TPR domain protein | HC | chr8:28536454-285374...    61   7e-10

>Medtr3g100100.1 | TPR domain protein | HC | chr3:45987094-45989713
           | 20130731
          Length = 223

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 111/216 (51%)

Query: 1   MDMDERQVMMRDXXXXXXXXXXXXXXXXXXXXXPQRLFAKLRFQNRASVDAKRHFVKGAQ 60
           M++ E+Q M RD                     PQ+  AKLRFQNR ++ AKRHFV+GAQ
Sbjct: 1   MEITEKQAMYRDIGLQVIMILAMALIFLSMHGIPQKFLAKLRFQNRKAIKAKRHFVRGAQ 60

Query: 61  LLAQXXXXXXXXXXXXXXXXXXXXXXXXXXIALDPKDAAAYLLKAMVLDLQGFRTXXXXX 120
           LL Q                          I LDPKDAA+YLLKAM+LDLQGFRT     
Sbjct: 61  LLTQARSSKNKSRSAINNLANEALGEAEKAIELDPKDAASYLLKAMILDLQGFRTSALES 120

Query: 121 XXXXXXXXXXXXXXXGERGDALLKRGELKLATSQRGKVDPALADLTESVKLSPRNVKAWS 180
                          GERGDAL KR ELKLATS+RG+VD ALADLTESV LSP+N KAW 
Sbjct: 121 LDAALSPLAAGSLEQGERGDALFKRAELKLATSERGRVDSALADLTESVILSPKNAKAWC 180

Query: 181 LLGECYXXXXXXXXXXXXXXXXLQLEPELSAAQEAL 216
            LGECY                 +L P+ S   EAL
Sbjct: 181 ALGECYEGKKMDEEAKKAYKEAHELAPQYSVPVEAL 216


>Medtr8g068400.1 | TPR domain protein | HC | chr8:28536454-28537488
           | 20130731
          Length = 216

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 91  IALDPKDAAAYLLKAMVLDLQGFRTXXXXXXXXXXXXXXXXXXXXGERGDALLKRGELKL 150
           +++ P+D + ++L+A  L L   RT                     ER DAL+ R E+KL
Sbjct: 82  LSISPRDPSIHILRAKALHLMNHRTAAIKSLDTAFSLPSAKMLSSEERADALVFRAEMKL 141

Query: 151 ATSQRGKVDPALADLTESVKLS----PRNVKAWSLLGECYXXXXXXXXXXXXXXXXLQLE 206
             ++R +V+ A+ D+ E++ LS      N++A  LLG+CY                L  E
Sbjct: 142 EVNRRRRVESAMEDIVEAIGLSGGEECENLEALCLLGKCYEWKGMREEAKNVFQKVLDFE 201

Query: 207 PELSAAQEALKRL 219
           P+   A   LKRL
Sbjct: 202 PDSVEALGGLKRL 214