Miyakogusa Predicted Gene

Lj1g3v1526270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1526270.1 tr|A9SK71|A9SK71_PHYPA Qc-SNARE, plant
SFT1-family OS=Physcomitrella patens subsp. patens GN=SFT1
PE,42.16,3e-17,no description,NULL; T_SNARE,Target SNARE coiled-coil
domain; SUBFAMILY NOT NAMED,NULL; GOLGI SNARE ,CUFF.27468.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099773.1 | target SNARE coiled-coil protein | HC | chr3:4...   228   1e-60
Medtr5g065550.1 | target SNARE coiled-coil protein | HC | chr5:2...   218   9e-58

>Medtr3g099773.1 | target SNARE coiled-coil protein | HC |
           chr3:45757679-45755053 | 20130731
          Length = 133

 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 120/131 (91%), Gaps = 1/131 (0%)

Query: 4   NSHRGPSSYGDAAPFRSREGLSTRAGAAS-DEIQLRIDPVGDMDDEITGLRGQVRKLRNV 62
           NS RG S YGDAAPFRSREGLSTR  AAS DEIQLRIDPVGD DDEITGLRGQVRKLRNV
Sbjct: 3   NSLRGGSFYGDAAPFRSREGLSTRTPAASSDEIQLRIDPVGDFDDEITGLRGQVRKLRNV 62

Query: 63  AEEIGTEVKSHRDFLEVMQMTMIKAQAGVKNNLRRLNKSIVQNGSNHIVHVVVFALICFS 122
           AEEIGTEVKS +DFLE +QMT+ KAQAGVKNNLRRLN+SIV+NGSNHIVHVV+FALICF+
Sbjct: 63  AEEIGTEVKSQKDFLEQLQMTVAKAQAGVKNNLRRLNRSIVRNGSNHIVHVVLFALICFT 122

Query: 123 IVYFWSKISRK 133
           IVY WSK+SRK
Sbjct: 123 IVYLWSKMSRK 133


>Medtr5g065550.1 | target SNARE coiled-coil protein | HC |
           chr5:27570044-27567643 | 20130731
          Length = 132

 Score =  218 bits (556), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 118/133 (88%), Gaps = 1/133 (0%)

Query: 1   MSFNSHRGPSSYGDAAPFRSREGLSTRAGAASDEIQLRIDPVGDMDDEITGLRGQVRKLR 60
           M+ NSHR  SSYG A PFRS +GLSTR GAASDEIQLRIDP+ D+DDE+TGL  QVR+L+
Sbjct: 1   MAANSHRAASSYGGAVPFRSSDGLSTRPGAASDEIQLRIDPM-DLDDELTGLHTQVRRLK 59

Query: 61  NVAEEIGTEVKSHRDFLEVMQMTMIKAQAGVKNNLRRLNKSIVQNGSNHIVHVVVFALIC 120
           NVAEEIGTE+K  +DFLE +QMTMIKAQAGVKNNLRRLNKSI+Q+GSNHIVHV+ FALIC
Sbjct: 60  NVAEEIGTEMKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVICFALIC 119

Query: 121 FSIVYFWSKISRK 133
           F +VYFWSK+SRK
Sbjct: 120 FFVVYFWSKMSRK 132