Miyakogusa Predicted Gene

Lj1g3v1515820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1515820.1 tr|E0CRP9|E0CRP9_VITVI Queuine
tRNA-ribosyltransferase OS=Vitis vinifera GN=VIT_18s0001g06460 PE=3
S,82.01,0,tgt_general: tRNA-guanine transglycosylases,
vario,Queuine/other tRNA-ribosyltransferase; SUBFAMILY
,gene.g31528.t1.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g099370.1 | queuine tRNA-ribosyltransferase | HC | chr5:43...   498   e-141
Medtr4g031180.1 | queuine tRNA-ribosyltransferase | HC | chr4:10...    99   6e-21

>Medtr5g099370.1 | queuine tRNA-ribosyltransferase | HC |
           chr5:43571527-43578673 | 20130731
          Length = 428

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/288 (84%), Positives = 253/288 (87%), Gaps = 26/288 (9%)

Query: 1   MLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRVEEAMYRTLRWIDRCIEAHKRPHDQ 60
           MLLTPE+SIQIQNRIGADIIMALDDV+KTT+TGPRVEEAMYRTLRWIDRCI AHKRPHDQ
Sbjct: 122 MLLTPEDSIQIQNRIGADIIMALDDVIKTTVTGPRVEEAMYRTLRWIDRCIAAHKRPHDQ 181

Query: 61  NLFGIVQGGLDPVLRDICVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTASLPEDKP 120
           NLFGIVQGGLDP+LRD+CVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTA+LPEDKP
Sbjct: 182 NLFGIVQGGLDPMLRDVCVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTAALPEDKP 241

Query: 121 RYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRAMADDTRPIDP 180
           RYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLK+R MADDTRPIDP
Sbjct: 242 RYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKNRDMADDTRPIDP 301

Query: 181 TCSCMVCKTYTRAYLHCLVTKDAMGSQLVSYHNLYYMMQ--------------------- 219
           TC CMVCK YTRAY+HCLVTKDAMGSQL+SYHNLYYMMQ                     
Sbjct: 302 TCLCMVCKNYTRAYIHCLVTKDAMGSQLLSYHNLYYMMQLSRNLHSSIVEERFPKFVCDF 361

Query: 220 ----FRKGDVPEWVCDAMEVAGIDISSCCATPFSSCQEYDSGKLSEEL 263
               F KGDVPEWVC+AMEVAGIDISSCCA P SSCQEYDS  +SEE 
Sbjct: 362 LHQMFPKGDVPEWVCNAMEVAGIDISSCCA-PLSSCQEYDSKNVSEEF 408


>Medtr4g031180.1 | queuine tRNA-ribosyltransferase | HC |
           chr4:10813292-10806220 | 20130731
          Length = 397

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 24/241 (9%)

Query: 1   MLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRVEEAMYRTLRWIDRCIEAHKRPHDQ 60
           +L+ P++ +++ + +  +I   L D V   +T  R   ++ RTLRW+D C+  +  P   
Sbjct: 126 LLIKPKDYVEMISCMRPNIWATLADEVPAWVTDKRNRTSVDRTLRWLDDCLALN--PAVG 183

Query: 61  NLFGIVQGGLDPVLRDICVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTASLPEDKP 120
           ++FG + GG +   R  C + + +RN+ GY IGG   GE  +    ++      L ++KP
Sbjct: 184 SVFGAIVGGTNLDERKRCAEEVAKRNVAGYWIGGFGLGEAIDERPALLRAIVDVLQDEKP 243

Query: 121 RYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALV-------PEGVLKLKHRAMAD 173
           R + G+G P +I+   A G D++D  Y       G AL         +   KL  R  +D
Sbjct: 244 RMICGLGLPEEILQGIAAGVDLFDSSYIYTLTLGGFALTFSLDKNGNQDNFKLSQRG-SD 302

Query: 174 DTR-------------PIDPTCSCMVCKTYTRAYLHCLVTKDAMGSQ-LVSYHNLYYMMQ 219
            T+             PI   CSC  C+ YT+AY++ L     M +Q L+  HN ++ ++
Sbjct: 303 STKINLRATEYRLDMSPIVDGCSCHTCQNYTKAYINHLYNVHEMLAQTLLEIHNAHHYLR 362

Query: 220 F 220
           F
Sbjct: 363 F 363