Miyakogusa Predicted Gene

Lj1g3v1502590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1502590.1 Non Characterized Hit- tr|I3SBJ9|I3SBJ9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.46,0,Histone-fold,Histone-fold; CCAAT-BINDING TRANSCRIPTION
FACTOR,NULL; HISTONE-LIKE TRANSCRIPTION FACTO,CUFF.27418.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099180.2 | nuclear transcription factor Y protein | HC | ...   280   6e-76
Medtr3g099180.1 | nuclear transcription factor Y protein | HC | ...   280   6e-76
Medtr7g113680.1 | nuclear transcription factor Y protein | HC | ...   203   1e-52
Medtr1g082660.1 | nuclear transcription factor Y protein | HC | ...   192   1e-49
Medtr1g082660.2 | nuclear transcription factor Y protein | HC | ...   192   1e-49
Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC | chr2:8235750...   161   3e-40
Medtr2g081630.1 | nuclear transcription factor Y protein | HC | ...   111   4e-25
Medtr2g081600.1 | nuclear transcription factor Y protein | HC | ...   111   4e-25
Medtr3g012030.2 | negative cofactor 2 transcriptional co-repress...    62   3e-10
Medtr8g041420.1 | negative cofactor 2 transcriptional co-repress...    62   4e-10
Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...    58   6e-09
Medtr5g088760.3 | negative cofactor 2 transcriptional co-repress...    55   3e-08
Medtr3g085430.1 | nuclear transcription factor Y protein | HC | ...    53   2e-07
Medtr3g012030.1 | negative cofactor 2 transcriptional co-repress...    49   3e-06
Medtr4g059710.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2202907...    47   9e-06

>Medtr3g099180.2 | nuclear transcription factor Y protein | HC |
           chr3:45466714-45470003 | 20130731
          Length = 218

 Score =  280 bits (716), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 143/151 (94%), Positives = 148/151 (98%), Gaps = 2/151 (1%)

Query: 47  MFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 106
           MFW+YQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI
Sbjct: 36  MFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 95

Query: 107 RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEE--ASLVAAAASGVPYY 164
           RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK+E  A++V AAASGVPYY
Sbjct: 96  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAIVGAAASGVPYY 155

Query: 165 YPPMGQPAGMMIGRPAMDPATGVYVQPPSQA 195
           YPPMGQPAGMMIGRPA+DPATGVYVQPPSQA
Sbjct: 156 YPPMGQPAGMMIGRPAVDPATGVYVQPPSQA 186


>Medtr3g099180.1 | nuclear transcription factor Y protein | HC |
           chr3:45466751-45470003 | 20130731
          Length = 217

 Score =  280 bits (716), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 143/151 (94%), Positives = 148/151 (98%), Gaps = 2/151 (1%)

Query: 47  MFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 106
           MFW+YQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI
Sbjct: 36  MFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 95

Query: 107 RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEE--ASLVAAAASGVPYY 164
           RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK+E  A++V AAASGVPYY
Sbjct: 96  RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAIVGAAASGVPYY 155

Query: 165 YPPMGQPAGMMIGRPAMDPATGVYVQPPSQA 195
           YPPMGQPAGMMIGRPA+DPATGVYVQPPSQA
Sbjct: 156 YPPMGQPAGMMIGRPAVDPATGVYVQPPSQA 186


>Medtr7g113680.1 | nuclear transcription factor Y protein | HC |
           chr7:46853507-46850661 | 20130731
          Length = 311

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 124/159 (77%), Gaps = 17/159 (10%)

Query: 48  FWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 107
           FW+ Q QEIE V DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+R
Sbjct: 134 FWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLR 193

Query: 108 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEE--ASL------VAAAAS 159
           SW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++K+E  AS+      VA  A 
Sbjct: 194 SWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPAD 253

Query: 160 GVPYYYPP------MGQPAGMMIGRPAMDPATGVYVQPP 192
            +PY Y P      +G  AG+++G+P MDP   +Y Q P
Sbjct: 254 ALPYCYMPPQHASQVGT-AGVIMGKPVMDP--NMYAQQP 289


>Medtr1g082660.1 | nuclear transcription factor Y protein | HC |
           chr1:36798252-36800703 | 20130731
          Length = 256

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 114/148 (77%), Gaps = 15/148 (10%)

Query: 48  FWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 107
           FW  Q QEIE V DFKNH LPLARIKKIMKADEDV+MISAEAP++FA+ACE+FILELT+R
Sbjct: 83  FWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLR 142

Query: 108 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEE--ASL------VAAAAS 159
           SW H EENKRRTLQKNDIAAAIT TDIFDFLVDIVPR+++K+E  AS+      V   A 
Sbjct: 143 SWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPAD 202

Query: 160 GVPY-YYPPM-----GQPAGMMIGRPAM 181
           G+PY Y PP      G P G+M+  P M
Sbjct: 203 GIPYCYMPPQNAQQAGNP-GLMMHNPNM 229


>Medtr1g082660.2 | nuclear transcription factor Y protein | HC |
           chr1:36798518-36800703 | 20130731
          Length = 256

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 114/148 (77%), Gaps = 15/148 (10%)

Query: 48  FWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 107
           FW  Q QEIE V DFKNH LPLARIKKIMKADEDV+MISAEAP++FA+ACE+FILELT+R
Sbjct: 83  FWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLR 142

Query: 108 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEE--ASL------VAAAAS 159
           SW H EENKRRTLQKNDIAAAIT TDIFDFLVDIVPR+++K+E  AS+      V   A 
Sbjct: 143 SWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPAD 202

Query: 160 GVPY-YYPPM-----GQPAGMMIGRPAM 181
           G+PY Y PP      G P G+M+  P M
Sbjct: 203 GIPYCYMPPQNAQQAGNP-GLMMHNPNM 229


>Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC |
           chr2:8235750-8235016 | 20130731
          Length = 244

 Score =  161 bits (408), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/144 (56%), Positives = 100/144 (69%), Gaps = 13/144 (9%)

Query: 48  FWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 107
           FW  Q +E+E V DF+N+ LPLARIKKIMKA+E V MISAEAPILFAKACE+FI+EL  R
Sbjct: 67  FWAKQNEEVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATR 126

Query: 108 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEASLVA-AAASGVPYYYP 166
           SW +AE NKR+TLQK+DIA+A++  ++FDFLVDIVPR+   E    +       VPYY P
Sbjct: 127 SWANAEVNKRKTLQKSDIASAVSSNEVFDFLVDIVPRENTMERDIFMGIPRRENVPYYLP 186

Query: 167 ------------PMGQPAGMMIGR 178
                       P   PAGM++GR
Sbjct: 187 MPVHVPPQYAAGPSYGPAGMLMGR 210


>Medtr2g081630.1 | nuclear transcription factor Y protein | HC |
           chr2:34260235-34259869 | 20130731
          Length = 117

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 65  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123
           H LPLARIKKIMK + EDV+MIS  API+F+KACELFI ELT RSW+ A + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 124 DIAAAITRTDIFDFLVDIVPRDEIKEEAS 152
           D+A+A+  TDIFDFL+ +V   +   +A+
Sbjct: 81  DVASAVIATDIFDFLITLVSNSDSSTDAT 109


>Medtr2g081600.1 | nuclear transcription factor Y protein | HC |
           chr2:34243690-34243268 | 20130731
          Length = 119

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 65  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123
           H LPLARIKKIMK + EDV+MIS  API+F+KACELFI ELT RSW+ A + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 124 DIAAAITRTDIFDFLVDIVPRDEIKEEASLV 154
           D+A+A+  TDIFDFL+ +V   +  ++ +++
Sbjct: 81  DVASAVIATDIFDFLITLVSNSDSTDDTTVM 111


>Medtr3g012030.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr3:3186291-3181373 | 20130731
          Length = 292

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 48/79 (60%)

Query: 66  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 125
           + P ARIKKIM+ADEDV  I+   P+L +KA ELF+ +L  R++    +   +T+    +
Sbjct: 8   RFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHL 67

Query: 126 AAAITRTDIFDFLVDIVPR 144
              +   ++FDFL DIV R
Sbjct: 68  KHCVQSYNVFDFLRDIVSR 86


>Medtr8g041420.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr8:15595067-15590978 | 20130731
          Length = 305

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%)

Query: 66  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 125
           + P ARIKKIM+ADEDV  I+   P+L +KA ELF+ +L  R++    +   +T+    +
Sbjct: 8   RFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHL 67

Query: 126 AAAITRTDIFDFLVDIVPR 144
              +   ++FDFL D+V +
Sbjct: 68  KHCVQSYNVFDFLKDVVSK 86


>Medtr5g088760.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 302

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 64  NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123
           + + P ARIKKIM+ADED+  I+   P+L +KA ELF+ +L  R++        +T+   
Sbjct: 6   DTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAF 65

Query: 124 DIAAAITRTDIFDFLVDIVPRDEIKEEASLVAAAASG 160
            +   I   ++FDFL     +D + +   L  +AA+G
Sbjct: 66  HLKQCIQTCNVFDFL-----KDTVSKVPDLGGSAATG 97


>Medtr5g088760.3 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 293

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 70  ARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAI 129
           ARIKKIM+ADED+  I+   P+L +KA ELF+ +L  R++        +T+    +   I
Sbjct: 3   ARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCI 62

Query: 130 TRTDIFDFLVDIVPRDEIKEEASLVAAAASG 160
              ++FDFL     +D + +   L  +AA+G
Sbjct: 63  QTCNVFDFL-----KDTVSKVPDLGGSAATG 88


>Medtr3g085430.1 | nuclear transcription factor Y protein | HC |
           chr3:38611793-38612780 | 20130731
          Length = 173

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 66  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 125
           + P +R+KKI+  D+DV+ +S+EA  L +++ ELF+  L  +S   A E KR+T++   +
Sbjct: 31  EFPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIEKKRKTVKLEHM 90

Query: 126 AAAITRTD-IFDFLVDIVP 143
             A+ R   I DFL+D +P
Sbjct: 91  RIAVKRNRPISDFLLDSLP 109


>Medtr3g012030.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr3:3186259-3181373 | 20130731
          Length = 275

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 76  MKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 135
           M+ADEDV  I+   P+L +KA ELF+ +L  R++    +   +T+    +   +   ++F
Sbjct: 1   MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVF 60

Query: 136 DFLVDIVPR 144
           DFL DIV R
Sbjct: 61  DFLRDIVSR 69


>Medtr4g059710.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:22029079-22032364 | 20130731
          Length = 179

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 61  DFKNHQLPLARIKKIMKAD-EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRT 119
           D K H  P+ RI+ ++K +  D+R +S EA +    A E F+ +L   ++    ++++++
Sbjct: 77  DAKTHVFPMNRIRTMLKGEISDLR-VSQEAILAINNAAEKFLEQLAEDAYGCCAQDRKKS 135

Query: 120 LQKNDIAAAITRTDIFDFLVDIVPRDEIKEEASLVAAAASG 160
           L  N ++  +++   +DFL D VP +++K E +L    + G
Sbjct: 136 LSYNHLSRVVSKQKRYDFLSDFVP-EKVKAEDALRETNSRG 175