Miyakogusa Predicted Gene

Lj1g3v1501530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1501530.1 Non Characterized Hit- tr|I1GU71|I1GU71_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50.98,4e-18,coiled-coil,NULL; seg,NULL,CUFF.27417.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099140.1 | thylakoid lumenal 17.9 kDa protein | HC | chr3...   190   6e-49

>Medtr3g099140.1 | thylakoid lumenal 17.9 kDa protein | HC |
           chr3:45446851-45448786 | 20130731
          Length = 216

 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 121/162 (74%), Gaps = 4/162 (2%)

Query: 1   MSLIGPLPPLASNTIPKLKTINPSIGTKFXXXXXXXXXXXXXXXXXPSSAIPSLNSQPPS 60
           + L+ PLP   +NTIPKL + N     KF                 PS AIPSLNSQPP 
Sbjct: 5   LRLLHPLPQTHTNTIPKLNSDNKQ---KFLPNLFSLAIAVTLTSPLPSHAIPSLNSQPPP 61

Query: 61  TSLTTP-FSQAKNLKVGLENGKIRTCPSINPGCISSNPKSSSFAFPWLIPENSLDNPIQK 119
           T+L+T  FSQ+KNL++GLENGKIR CPSINPGCIS+NPKSSSF FPW +PENS+DN IQ+
Sbjct: 62  TTLSTTPFSQSKNLQLGLENGKIRPCPSINPGCISTNPKSSSFDFPWTVPENSVDNAIQR 121

Query: 120 LREAILKTQKNVKFLLVEDTPDGQYMQAEVDAGFDRDVLEFL 161
           LREAIL+TQKNVKF  VEDTPDGQY+QAEVD  FDRDVLEFL
Sbjct: 122 LREAILETQKNVKFQPVEDTPDGQYLQAEVDGKFDRDVLEFL 163