Miyakogusa Predicted Gene

Lj1g3v1500510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1500510.1 Non Characterized Hit- tr|I3T886|I3T886_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,68.06,0.000000000000004,seg,NULL,CUFF.27411.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099130.1 | mediator of RNA polymerase II transcription su...    76   1e-14
Medtr3g099130.2 | mediator of RNA polymerase II transcription su...    75   1e-14

>Medtr3g099130.1 | mediator of RNA polymerase II transcription
          subunit 30, putative | HC | chr3:45445292-45441330 |
          20130731
          Length = 179

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 1  MEEQSMVIATNNPKTTQELSMEGQRFLEETIQHAYQILSSMNDELCNPVLW 51
          MEEQS +  T + KTTQ+L++EG ++LEETIQHA++ILSSMNDELCNPV W
Sbjct: 1  MEEQS-INGTMSTKTTQDLAIEGHKYLEETIQHAFKILSSMNDELCNPVWW 50


>Medtr3g099130.2 | mediator of RNA polymerase II transcription
          subunit 30, putative | HC | chr3:45445225-45441346 |
          20130731
          Length = 149

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 1  MEEQSMVIATNNPKTTQELSMEGQRFLEETIQHAYQILSSMNDELCNPVLW 51
          MEEQS +  T + KTTQ+L++EG ++LEETIQHA++ILSSMNDELCNPV W
Sbjct: 1  MEEQS-INGTMSTKTTQDLAIEGHKYLEETIQHAFKILSSMNDELCNPVWW 50