Miyakogusa Predicted Gene

Lj1g3v1499460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1499460.1 tr|B9PDP4|B9PDP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_585654 PE=4
SV=1,53.73,0.0000000002, ,CUFF.27408.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099090.1 | F-box/LRR plant protein | HC | chr3:45413956-4...   383   e-107
Medtr3g099090.2 | F-box/LRR plant protein | HC | chr3:45413956-4...   293   8e-80

>Medtr3g099090.1 | F-box/LRR plant protein | HC |
           chr3:45413956-45423808 | 20130731
          Length = 535

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/250 (75%), Positives = 206/250 (82%)

Query: 1   MDIKEYSASVSSCKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSFVYCSGN 60
           MDIKEYSASVS  +FPVGIILFGE+SSDMKLV+EKLDYAMPMDT++VGDERG  V+  GN
Sbjct: 204 MDIKEYSASVSGHQFPVGIILFGEASSDMKLVMEKLDYAMPMDTVVVGDERGCSVFRCGN 263

Query: 61  DSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSVKTNFDDCS 120
           DSR   G     EAVALVFAQDR+RSSG+IRFH+AFSNGVS VG RYKA SV+TN  DCS
Sbjct: 264 DSRHACGSKGCIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGRYKAASVRTNKSDCS 323

Query: 121 TWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSIA 180
           TWLTA+REG Q+ LDGQ+IL +IN  LEN IE PELYIGV KHRK SIGAEKPMPRT IA
Sbjct: 324 TWLTAKREGHQQPLDGQTILHDINTLLENHIEPPELYIGVTKHRKVSIGAEKPMPRTCIA 383

Query: 181 YHGVVGGDEEYLYVDGIGIKTGDIFQFYHSDPKAALGSLTEVHDALNNIKLEKNSRRFMC 240
           YHGVVGGDEEYLYVDG+GIKTGDIFQFYHSDP  AL SLTEV  +    KL +NSR    
Sbjct: 384 YHGVVGGDEEYLYVDGMGIKTGDIFQFYHSDPNVALASLTEVRGSFKKFKLGRNSRSSEN 443

Query: 241 DGDNGVNVFG 250
           DGDN +NVFG
Sbjct: 444 DGDNAINVFG 453


>Medtr3g099090.2 | F-box/LRR plant protein | HC |
           chr3:45413956-45419675 | 20130731
          Length = 394

 Score =  293 bits (751), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 159/191 (83%)

Query: 1   MDIKEYSASVSSCKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSFVYCSGN 60
           MDIKEYSASVS  +FPVGIILFGE+SSDMKLV+EKLDYAMPMDT++VGDERG  V+  GN
Sbjct: 204 MDIKEYSASVSGHQFPVGIILFGEASSDMKLVMEKLDYAMPMDTVVVGDERGCSVFRCGN 263

Query: 61  DSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSVKTNFDDCS 120
           DSR   G     EAVALVFAQDR+RSSG+IRFH+AFSNGVS VG RYKA SV+TN  DCS
Sbjct: 264 DSRHACGSKGCIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGRYKAASVRTNKSDCS 323

Query: 121 TWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSIA 180
           TWLTA+REG Q+ LDGQ+IL +IN  LEN IE PELYIGV KHRK SIGAEKPMPRT IA
Sbjct: 324 TWLTAKREGHQQPLDGQTILHDINTLLENHIEPPELYIGVTKHRKVSIGAEKPMPRTCIA 383

Query: 181 YHGVVGGDEEY 191
           YHGVVG D  +
Sbjct: 384 YHGVVGYDINF 394