Miyakogusa Predicted Gene
- Lj1g3v1486310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1486310.1 tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex subunit
SMARCC2 OS=Medicago truncatula GN=MTR_3g099000 PE=4
S,73.8,0,SWIRM,SWIRM domain; SANT,SANT domain;
Myb_DNA-binding,SANT/Myb domain; SANT SWI3, ADA2, N-CoR and
T,CUFF.27402.1
(556 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g099000.2 | SWI/SNF complex protein | HC | chr3:45370551-4... 651 0.0
Medtr3g099000.1 | SWI/SNF complex protein | HC | chr3:45370551-4... 651 0.0
Medtr3g116120.1 | SWI/SNF complex subunit SWI3B-like protein | H... 102 1e-21
Medtr6g053260.1 | F-box and associated interaction domain protei... 100 5e-21
Medtr5g085170.1 | SWI/SNF complex subunit SWI3B-like protein | H... 99 7e-21
Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC | chr4:2625... 74 5e-13
Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC | chr4:2625... 74 5e-13
Medtr3g088480.1 | SWI/SNF complex protein | HC | chr3:40113660-4... 66 9e-11
>Medtr3g099000.2 | SWI/SNF complex protein | HC |
chr3:45370551-45376366 | 20130731
Length = 540
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/557 (63%), Positives = 392/557 (70%), Gaps = 27/557 (4%)
Query: 1 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 60
ME KDP S+ SELELYTIPSSSKWFAWDEIHETE+TA KE+FDGTSI+RTPK
Sbjct: 1 MEGSKDPISD--------SELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPK 52
Query: 61 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYXXXXXXXX 120
+YKEYRDF+INKYRE+PSR+LTFTEVRKSLVGDVT L KVFLFLE GLINY
Sbjct: 53 IYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGND 112
Query: 121 XXXXXXXXXXXXXXXXXXXXXAPNGIRVVATPNSLKPLSAPRNXXXXXXXXXXXXXXXXX 180
APNGIRVVATPNSLKP+S PR+
Sbjct: 113 GEAEKEHEKERCKLKVEEG--APNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAGVK- 169
Query: 181 XLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSV 240
+ PLAS++DVYGDL+ KE+NCG CGDKCG HYRSTKDNF IC KCFKNGNYGEKRS+
Sbjct: 170 -IAPLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTKDNFIICTKCFKNGNYGEKRSM 228
Query: 241 EDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIEL 300
EDF LNES+E S S VWTEGETLLLLESVLKHGDDWELVAQSV+TKTKL+CISKLIEL
Sbjct: 229 EDFKLNESSEISANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIEL 288
Query: 301 PFGELMLGSAHRXXXXXXXXXXXXXXXQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAV 360
PFGELML S R QVQ SSSDHQETS TQ+Q+ E +E E NGDAV
Sbjct: 289 PFGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAV 348
Query: 361 NESPSKRQRVAALSESSSSLMKQVGLISTSVDPHXXXXXXXXXXXXLCDENLCPREIFDV 420
NE+PSKR+RV+ LS+SSSSLMKQVGL+ST VDPH LCDEN PR+IFDV
Sbjct: 349 NENPSKRRRVSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIFDV 408
Query: 421 EEDYASSANSLISDSERAHEVEGLEM-DRSTQAEKDDRGPKDDIPLPXXXXXXXXXXXXX 479
EED AS+ RA E EGLEM + STQ+E KDDIPL
Sbjct: 409 EEDNASA---------RALEAEGLEMVEGSTQSE-----VKDDIPLTLRIRAAIGTALGA 454
Query: 480 XXXXXXXXXDQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSIL 539
DQEDREIEHLVATIIEAQ+ KLQ KVKHFDELELLM+KEHAE+EELKDSIL
Sbjct: 455 TAARAKLLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSIL 514
Query: 540 TERIDVLQKTFRSGITR 556
TERIDVL+KTF+SG+ R
Sbjct: 515 TERIDVLRKTFKSGVAR 531
>Medtr3g099000.1 | SWI/SNF complex protein | HC |
chr3:45370551-45376390 | 20130731
Length = 540
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/557 (63%), Positives = 392/557 (70%), Gaps = 27/557 (4%)
Query: 1 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 60
ME KDP S+ SELELYTIPSSSKWFAWDEIHETE+TA KE+FDGTSI+RTPK
Sbjct: 1 MEGSKDPISD--------SELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPK 52
Query: 61 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYXXXXXXXX 120
+YKEYRDF+INKYRE+PSR+LTFTEVRKSLVGDVT L KVFLFLE GLINY
Sbjct: 53 IYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGND 112
Query: 121 XXXXXXXXXXXXXXXXXXXXXAPNGIRVVATPNSLKPLSAPRNXXXXXXXXXXXXXXXXX 180
APNGIRVVATPNSLKP+S PR+
Sbjct: 113 GEAEKEHEKERCKLKVEEG--APNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAGVK- 169
Query: 181 XLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSV 240
+ PLAS++DVYGDL+ KE+NCG CGDKCG HYRSTKDNF IC KCFKNGNYGEKRS+
Sbjct: 170 -IAPLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTKDNFIICTKCFKNGNYGEKRSM 228
Query: 241 EDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIEL 300
EDF LNES+E S S VWTEGETLLLLESVLKHGDDWELVAQSV+TKTKL+CISKLIEL
Sbjct: 229 EDFKLNESSEISANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIEL 288
Query: 301 PFGELMLGSAHRXXXXXXXXXXXXXXXQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAV 360
PFGELML S R QVQ SSSDHQETS TQ+Q+ E +E E NGDAV
Sbjct: 289 PFGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAV 348
Query: 361 NESPSKRQRVAALSESSSSLMKQVGLISTSVDPHXXXXXXXXXXXXLCDENLCPREIFDV 420
NE+PSKR+RV+ LS+SSSSLMKQVGL+ST VDPH LCDEN PR+IFDV
Sbjct: 349 NENPSKRRRVSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIFDV 408
Query: 421 EEDYASSANSLISDSERAHEVEGLEM-DRSTQAEKDDRGPKDDIPLPXXXXXXXXXXXXX 479
EED AS+ RA E EGLEM + STQ+E KDDIPL
Sbjct: 409 EEDNASA---------RALEAEGLEMVEGSTQSE-----VKDDIPLTLRIRAAIGTALGA 454
Query: 480 XXXXXXXXXDQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSIL 539
DQEDREIEHLVATIIEAQ+ KLQ KVKHFDELELLM+KEHAE+EELKDSIL
Sbjct: 455 TAARAKLLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSIL 514
Query: 540 TERIDVLQKTFRSGITR 556
TERIDVL+KTF+SG+ R
Sbjct: 515 TERIDVLRKTFKSGVAR 531
>Medtr3g116120.1 | SWI/SNF complex subunit SWI3B-like protein | HC |
chr3:54294108-54291302 | 20130731
Length = 483
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%), Gaps = 6/96 (6%)
Query: 17 SESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYRED 76
+ S+ L +PS S+WF+WD IHE E + E S+ P+VYK YR+ ++ +R +
Sbjct: 50 TSSDANLILVPSHSRWFSWDSIHECEIRNIPE------SSKNPRVYKYYRNSIVKFFRFN 103
Query: 77 PSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
P+RK+TFT+VRK+LVGDV +R+VF FLE+ GLINY
Sbjct: 104 PNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINY 139
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Query: 203 CGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTEG 262
C C + C + K+N T+C +CF GNY S +F E +E + + WTE
Sbjct: 180 CSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNE---WTEK 236
Query: 263 ETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRXXXXXXXXXX 322
ETL LLE++ GDDW+ VA V +T +C+++ +ELPFG+ L H
Sbjct: 237 ETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYPH----------- 285
Query: 323 XXXXXQVQSSSSDHQETSKTQNQTP---ELTSEKEPNGDAVNESPSKRQRVAALSESSSS 379
S S+ + Q + P E SE P+ + SKR + L+++S+
Sbjct: 286 --------SESAPCIDDGSDQLKPPVAAECESETVPSDKS-----SKRMCLTPLADASNP 332
Query: 380 LMKQVGLIST 389
+M Q +S
Sbjct: 333 IMAQAAFLSA 342
>Medtr6g053260.1 | F-box and associated interaction domain protein |
LC | chr6:19123038-19126671 | 20130731
Length = 708
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 18/116 (15%)
Query: 9 SNPGRTDDSESELE------------LYTIPSSSKWFAWDEIHETERTALKEFFDGTSIS 56
S P RT +S S E L +PS S+WF+WD IHE E + E S
Sbjct: 4 STPNRTVESPSSTETPPKPKTSSDGNLILVPSHSRWFSWDSIHECEIRNIPE------SS 57
Query: 57 RTPKVYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
+ P+VYK YR+ ++ +R +P+RK+TFT+VRK+LVGDV +R+VF FLE GLINY
Sbjct: 58 KNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLEDWGLINY 113
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 220 DNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWE 279
+N T+C++CF GNY S +F + E S + WTE ETL LLE++ GDDW+
Sbjct: 135 NNMTLCVRCFICGNYRIGMSNTEF---KRVEISEETKKEWTEEETLNLLEAITNFGDDWK 191
Query: 280 LVAQSVQTKTKLDCISKLIELPFGE 304
V+ V +T +C+++ +ELPFG+
Sbjct: 192 RVSHQVVGRTDKECVARFLELPFGD 216
>Medtr5g085170.1 | SWI/SNF complex subunit SWI3B-like protein | HC |
chr5:36752674-36753975 | 20130731
Length = 433
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 66/96 (68%), Gaps = 6/96 (6%)
Query: 17 SESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYRED 76
+ S+ L +PS S+WF+WD IHE E + E S+ P+VYK YR+ ++ +R +
Sbjct: 24 TSSDANLILVPSHSRWFSWDSIHECEIRNIPE------SSKNPRVYKYYRNSIVKFFRFN 77
Query: 77 PSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINY 112
P+RK+TFT+VRK +VGDV +R+VF FLE+ GLINY
Sbjct: 78 PNRKITFTDVRKIIVGDVGSIRRVFDFLEAWGLINY 113
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 203 CGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTEG 262
C +C D C + K+N +C +CF GNY S F E +E + + WTE
Sbjct: 154 CSVCMD-C----FACDKNNRKLCARCFIRGNYRIGMSNTKFKRVEISEETKNE---WTEE 205
Query: 263 ETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELM 306
ETL LLE++ GDDW+ V+ V +T +C+++ +ELPFG+ +
Sbjct: 206 ETLNLLEAITNFGDDWKRVSHQVVGRTDKECVARFLELPFGDQL 249
>Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC |
chr4:26258593-26267090 | 20130731
Length = 1041
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%)
Query: 24 YTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLTF 83
+ +P+ WF+W +IH E+ + FF+G S +RTP Y E R++++ K+ +P+ ++
Sbjct: 139 HVVPTHCGWFSWSDIHSIEKRMMPSFFNGISENRTPDKYMEIRNWIMKKFHSNPNIQIEL 198
Query: 84 TEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + +GD +++ FL+ GLIN+
Sbjct: 199 KDLSELDIGDSDARQEIMEFLDYWGLINF 227
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 200 ELNCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTV 258
E +C C C + Y K +F +C CF N +G S DFIL E E + S
Sbjct: 304 EYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGTGMSPLDFILMEPAEAAGVSSGK 363
Query: 259 WTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPF 302
WT+ ETLLLLE++ + ++W +A+ V TK+K CI +++P
Sbjct: 364 WTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPI 407
>Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC |
chr4:26258609-26267090 | 20130731
Length = 1039
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%)
Query: 24 YTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLTF 83
+ +P+ WF+W +IH E+ + FF+G S +RTP Y E R++++ K+ +P+ ++
Sbjct: 139 HVVPTHCGWFSWSDIHSIEKRMMPSFFNGISENRTPDKYMEIRNWIMKKFHSNPNIQIEL 198
Query: 84 TEVRKSLVGDVTLLRKVFLFLESCGLINY 112
++ + +GD +++ FL+ GLIN+
Sbjct: 199 KDLSELDIGDSDARQEIMEFLDYWGLINF 227
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 200 ELNCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTV 258
E +C C C + Y K +F +C CF N +G S DFIL E E + S
Sbjct: 304 EYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGTGMSPLDFILMEPAEAAGVSSGK 363
Query: 259 WTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPF 302
WT+ ETLLLLE++ + ++W +A+ V TK+K CI +++P
Sbjct: 364 WTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPI 407
>Medtr3g088480.1 | SWI/SNF complex protein | HC |
chr3:40113660-40120664 | 20130731
Length = 782
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 23 LYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLT 82
+ +P S WF+ +H ER A+ FF G S TP+ Y E R++++ Y E+P +++T
Sbjct: 170 VLVLPMHSDWFSPGTVHRLERQAVPHFFSGKSQDLTPEKYMECRNYIVALYMEEPGKRIT 229
Query: 83 FTEVRKSLVG----DVTLLRKVFLFLESCGLINY 112
++ + VG D+T ++ FL+ G+INY
Sbjct: 230 ASDCQGLQVGVGHEDLT---RIVRFLDHWGIINY 260
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 200 ELNCGICGDKCGFEHYRSTKD-NFTICMKCFKNGNYGEKRSVEDFI-LNESNENSVKQST 257
E +C C +Y+S K+ + +C CF +G + S DF+ ++ S +
Sbjct: 336 ENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSSIDFLRVDSSRDYGELDVE 395
Query: 258 VWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPF 302
WT+ ETLLLLE++ + ++W +A+ V TK+K CI + LP
Sbjct: 396 SWTDQETLLLLEAMEIYHENWNEIAEHVGTKSKAQCILHFLRLPM 440
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 489 DQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQK 548
D E+REI+ L A II Q+ +L+ K+K F E+E L+ KE ++E K ER V+
Sbjct: 612 DHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISA 671
Query: 549 TFRSGIT 555
F + T
Sbjct: 672 RFGTAGT 678