Miyakogusa Predicted Gene

Lj1g3v1486260.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1486260.3 Non Characterized Hit- tr|C4J6K4|C4J6K4_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,73.77,2e-18,DEK
C-terminal domain,NULL; DEK_C,DEK, C-terminal; SUBFAMILY NOT
NAMED,NULL; DEK PROTEIN,NULL; seg,N,CUFF.27410.3
         (477 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g098990.1 | DEK domain chromatin associated protein | HC |...   452   e-127
Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC | chr...   175   1e-43
Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC | chr...   175   1e-43
Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC | chr...   175   1e-43
Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC | chr...   171   1e-42
Medtr5g096450.1 | transmembrane protein, putative | LC | chr5:42...    60   6e-09

>Medtr3g098990.1 | DEK domain chromatin associated protein | HC |
           chr3:45365234-45359585 | 20130731
          Length = 540

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/424 (58%), Positives = 286/424 (67%), Gaps = 14/424 (3%)

Query: 30  ASEKKDPATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAF 89
           +SEKK P TP S+RPTRERKTVERY                L+IEKGRG QLKDIPNVAF
Sbjct: 85  SSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAF 144

Query: 90  KLSKRKPDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVK 149
           KLSKRKPDDNLH LHS+LFGK+TK  NLKRNIGQFSG+VW ENEEKQR +VKERIDK VK
Sbjct: 145 KLSKRKPDDNLHMLHSLLFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVK 204

Query: 150 EKLVDFCDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPS 209
           EKL+ FCDVLNIP++K ++KKEELS KLLEFLE+P ATTDVLLA+ E            S
Sbjct: 205 EKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSS 264

Query: 210 KSPGEASTETPAXXXXXXXXXXXXXXXXXDVEEDEKAELSDAKDESQ--ENVAAPHXXXX 267
           K+PG    ETPA                 DVEED++AELSDAKDESQ  E+VA  +    
Sbjct: 265 KTPG----ETPA-KKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQEDEDVAVANNGSD 319

Query: 268 XXXXXXXXXXXXXXXXXXXXXXXXXEGSGSKAGERTKSAKKTPVKSSKNVDKTPKKSTPK 327
                                    EGS +KA  ++ S KKT  K++K+ +KTPKKS PK
Sbjct: 320 NEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPK 379

Query: 328 QTAAEHDSASASLSKSKQPASKKRKTENEKPDTKGKASSKKQTDKSSKALVKDQXXXXXX 387
           ++  E D  SASLSKS QPA+K +KT  EK DTKGKA+S     K++KA VKDQ      
Sbjct: 380 KSITEQD--SASLSKSDQPATKIQKTGKEKQDTKGKAAS-----KTAKAPVKDQGKGKSS 432

Query: 388 XXXXXVPSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVI 447
                 PSR+ MHAVVV+ILKEVDFN ATL DILRQLG HFG+DLMHRKAEVKDIITDVI
Sbjct: 433 KKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVI 492

Query: 448 NNMS 451
           NNMS
Sbjct: 493 NNMS 496


>Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC |
           chr3:23548030-23558551 | 20130731
          Length = 805

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 115/182 (63%), Gaps = 6/182 (3%)

Query: 36  PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 95
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 96  PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 155
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 156 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 215
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 216 ST 217
           ST
Sbjct: 545 ST 546



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 394 PSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDII 443
           P+ + +H  + +ILKEVDFNTAT +DIL+ L   F VDL  +K+ +K +I
Sbjct: 727 PTDDQLHDAICEILKEVDFNTATFTDILKLLAKQFDVDLTPKKSAIKLMI 776


>Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC |
           chr3:23548017-23558551 | 20130731
          Length = 805

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 115/182 (63%), Gaps = 6/182 (3%)

Query: 36  PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 95
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 96  PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 155
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 156 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 215
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 216 ST 217
           ST
Sbjct: 545 ST 546



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 394 PSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDII 443
           P+ + +H  + +ILKEVDFNTAT +DIL+ L   F VDL  +K+ +K +I
Sbjct: 727 PTDDQLHDAICEILKEVDFNTATFTDILKLLAKQFDVDLTPKKSAIKLMI 776


>Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC |
           chr3:23548384-23558551 | 20130731
          Length = 805

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 115/182 (63%), Gaps = 6/182 (3%)

Query: 36  PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 95
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 96  PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 155
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 156 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 215
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 216 ST 217
           ST
Sbjct: 545 ST 546



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 394 PSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDII 443
           P+ + +H  + +ILKEVDFNTAT +DIL+ L   F VDL  +K+ +K +I
Sbjct: 727 PTDDQLHDAICEILKEVDFNTATFTDILKLLAKQFDVDLTPKKSAIKLMI 776


>Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC |
           chr5:41846309-41853066 | 20130731
          Length = 872

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 109/162 (67%), Gaps = 5/162 (3%)

Query: 35  DPATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKR 94
           +P TP + RP RERK+VER                   IE+GRG  LK+IPNVAFKLS+R
Sbjct: 443 EPTTPTTNRPVRERKSVERLVESYDRDASKE-----FQIEEGRGTPLKNIPNVAFKLSRR 497

Query: 95  KPDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVD 154
           K DD L  LH+ILF +R KA  +K+NI +FSGFVW ENEEKQ  KVKE+ DK  KEKL++
Sbjct: 498 KVDDTLKFLHTILFCRRGKAAVIKKNILRFSGFVWHENEEKQMIKVKEKFDKCNKEKLLE 557

Query: 155 FCDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNE 196
           F D+L++PV   N +KE++  KL++FL  PQ T  VLLA+ E
Sbjct: 558 FSDLLDVPVGNANTRKEDIIAKLIDFLVAPQVTKSVLLAEQE 599



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query: 394 PSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDII 443
           PS + +   +  I K+VDFNTAT +DIL+ LG  F VDL  RKA VK II
Sbjct: 800 PSDDQLRKAICVIFKKVDFNTATFADILKLLGKQFDVDLTPRKASVKTII 849


>Medtr5g096450.1 | transmembrane protein, putative | LC |
           chr5:42173014-42171562 | 20130731
          Length = 217

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 65/152 (42%), Gaps = 38/152 (25%)

Query: 37  ATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRKP 96
            TP +  P RERK++ R                 LVI       L    +V  KLS +K 
Sbjct: 67  TTPTTNCPLRERKSISR----------------LLVIFM----TLVFYASVVLKLSGKKI 106

Query: 97  DDNLHALHSILFGKRTKAY-------NLKRNIGQFSGFV---------WTE--NEEKQRA 138
           D  L  LH ILFG+R K Y        L      FS  V         W+     EKQ  
Sbjct: 107 DYTLKLLHKILFGRRGKGYPTSHSRTILLHYTTYFSFHVTLTWNNEINWSNRCYYEKQMI 166

Query: 139 KVKERIDKYVKEKLVDFCDVLNIPVSKGNIKK 170
           KVK   D+  KEKL++F DVL+IPV   N +K
Sbjct: 167 KVKIFFDQRNKEKLLEFSDVLDIPVGNPNSRK 198