Miyakogusa Predicted Gene

Lj1g3v1486260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1486260.1 Non Characterized Hit- tr|C4J6K4|C4J6K4_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,73.77,2e-18,DEK
C-terminal domain,NULL; DEK_C,DEK, C-terminal; SUBFAMILY NOT
NAMED,NULL; DEK PROTEIN,NULL; seg,N,CUFF.27410.1
         (569 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g098990.1 | DEK domain chromatin associated protein | HC |...   474   e-134
Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC | chr...   181   3e-45
Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC | chr...   181   3e-45
Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC | chr...   181   3e-45
Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC | chr...   173   4e-43
Medtr5g096450.1 | transmembrane protein, putative | LC | chr5:42...    60   6e-09

>Medtr3g098990.1 | DEK domain chromatin associated protein | HC |
           chr3:45365234-45359585 | 20130731
          Length = 540

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/424 (62%), Positives = 300/424 (70%), Gaps = 15/424 (3%)

Query: 123 ASEKKDPATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAF 182
           +SEKK P TP S+RPTRERKTVERY                L+IEKGRG QLKDIPNVAF
Sbjct: 85  SSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAF 144

Query: 183 KLSKRKPDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVK 242
           KLSKRKPDDNLH LHS+LFGK+TK  NLKRNIGQFSG+VW ENEEKQR +VKERIDK VK
Sbjct: 145 KLSKRKPDDNLHMLHSLLFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVK 204

Query: 243 EKLVDFCDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPS 302
           EKL+ FCDVLNIP++K ++KKEELS KLLEFLE+P ATTDVLLA+ E            S
Sbjct: 205 EKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSS 264

Query: 303 KSPGEASTETPAKQKK-TSESGKKRKGSSDVEEDEKAELSDAKDESQ--ENVAAPHXXXX 359
           K+PG    ETPAK+KK TSESGKKRK  SDVEED++AELSDAKDESQ  E+VA  +    
Sbjct: 265 KTPG----ETPAKKKKQTSESGKKRK-PSDVEEDDQAELSDAKDESQEDEDVAVANNGSD 319

Query: 360 XXXXXXXXXXXXXXXXXXXXXXXXXEGSGSKAGERTKSAKKTPVKSSKNVDKTPKKSTPK 419
                                    EGS +KA  ++ S KKT  K++K+ +KTPKKS PK
Sbjct: 320 NEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPK 379

Query: 420 QTAAEHDSASASLSKSKQPASKKRKTENEKPDTKGKASSKKQTDKSSKALVKDQXXXXXX 479
           ++  E D  SASLSKS QPA+K +KT  EK DTKGKA+S     K++KA VKDQ      
Sbjct: 380 KSITEQD--SASLSKSDQPATKIQKTGKEKQDTKGKAAS-----KTAKAPVKDQGKGKSS 432

Query: 480 XXXXXVPSREAMHAVVVDILKEVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVI 539
                 PSR+ MHAVVV+ILKEVDFN ATL DILRQLG HFG+DLMHRKAEVKDIITDVI
Sbjct: 433 KKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVI 492

Query: 540 NNMS 543
           NNMS
Sbjct: 493 NNMS 496


>Medtr3g058970.2 | DEK carboxy-terminal domain protein | HC |
           chr3:23548030-23558551 | 20130731
          Length = 805

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 131/209 (62%), Gaps = 9/209 (4%)

Query: 129 PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 188
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 189 PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 248
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 249 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 308
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 309 STE--TPAKQKKTSE-SGKKRKGSSDVEE 334
           ST   +  +QKK  + SG ++K ++D E+
Sbjct: 545 STSRGSGKRQKKNEDSSGVEKKSTTDTED 573


>Medtr3g058970.1 | DEK carboxy-terminal domain protein | HC |
           chr3:23548017-23558551 | 20130731
          Length = 805

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 131/209 (62%), Gaps = 9/209 (4%)

Query: 129 PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 188
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 189 PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 248
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 249 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 308
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 309 STE--TPAKQKKTSE-SGKKRKGSSDVEE 334
           ST   +  +QKK  + SG ++K ++D E+
Sbjct: 545 STSRGSGKRQKKNEDSSGVEKKSTTDTED 573


>Medtr3g058970.3 | DEK carboxy-terminal domain protein | HC |
           chr3:23548384-23558551 | 20130731
          Length = 805

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 131/209 (62%), Gaps = 9/209 (4%)

Query: 129 PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 188
           P TP S+RP RERK+VER                 L I KGRG  LKDIPNVAFKLS+RK
Sbjct: 371 PKTPTSDRPVRERKSVERLVALIDKDSTKE-----LQIAKGRGTPLKDIPNVAFKLSRRK 425

Query: 189 PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 248
            DD+L   H+ILFG+R KA  +K NI +FSGFVW +NEEKQ  KVKE++D+  KEKL++F
Sbjct: 426 TDDSLKLFHTILFGRRGKAVQVKSNILRFSGFVWHDNEEKQMLKVKEKLDRCNKEKLLEF 485

Query: 249 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNEXXXXXXXXXXXPSKSPGEA 308
           CDVL+I ++K    KE++  KL +FL  P ATT V+LAD E            +   G A
Sbjct: 486 CDVLDITITKSTT-KEDIIAKLTDFLVAPHATTTVVLADKESSKKRRRTVKRGTPRSGGA 544

Query: 309 STE--TPAKQKKTSE-SGKKRKGSSDVEE 334
           ST   +  +QKK  + SG ++K ++D E+
Sbjct: 545 STSRGSGKRQKKNEDSSGVEKKSTTDTED 573


>Medtr5g095720.1 | DEK carboxy-terminal domain protein | HC |
           chr5:41846309-41853066 | 20130731
          Length = 872

 Score =  173 bits (439), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 108/161 (67%), Gaps = 5/161 (3%)

Query: 129 PATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRK 188
           P TP + RP RERK+VER                   IE+GRG  LK+IPNVAFKLS+RK
Sbjct: 444 PTTPTTNRPVRERKSVERLVESYDRDASKE-----FQIEEGRGTPLKNIPNVAFKLSRRK 498

Query: 189 PDDNLHALHSILFGKRTKAYNLKRNIGQFSGFVWTENEEKQRAKVKERIDKYVKEKLVDF 248
            DD L  LH+ILF +R KA  +K+NI +FSGFVW ENEEKQ  KVKE+ DK  KEKL++F
Sbjct: 499 VDDTLKFLHTILFCRRGKAAVIKKNILRFSGFVWHENEEKQMIKVKEKFDKCNKEKLLEF 558

Query: 249 CDVLNIPVSKGNIKKEELSVKLLEFLENPQATTDVLLADNE 289
            D+L++PV   N +KE++  KL++FL  PQ T  VLLA+ E
Sbjct: 559 SDLLDVPVGNANTRKEDIIAKLIDFLVAPQVTKSVLLAEQE 599


>Medtr5g096450.1 | transmembrane protein, putative | LC |
           chr5:42173014-42171562 | 20130731
          Length = 217

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 65/152 (42%), Gaps = 38/152 (25%)

Query: 130 ATPASERPTRERKTVERYXXXXXXXXXXXXXXXXLVIEKGRGEQLKDIPNVAFKLSKRKP 189
            TP +  P RERK++ R                 LVI       L    +V  KLS +K 
Sbjct: 67  TTPTTNCPLRERKSISR----------------LLVIFM----TLVFYASVVLKLSGKKI 106

Query: 190 DDNLHALHSILFGKRTKAY-------NLKRNIGQFSGFV---------WTE--NEEKQRA 231
           D  L  LH ILFG+R K Y        L      FS  V         W+     EKQ  
Sbjct: 107 DYTLKLLHKILFGRRGKGYPTSHSRTILLHYTTYFSFHVTLTWNNEINWSNRCYYEKQMI 166

Query: 232 KVKERIDKYVKEKLVDFCDVLNIPVSKGNIKK 263
           KVK   D+  KEKL++F DVL+IPV   N +K
Sbjct: 167 KVKIFFDQRNKEKLLEFSDVLDIPVGNPNSRK 198