Miyakogusa Predicted Gene

Lj1g3v1465190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1465190.1 tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1
(RNA recognition motif); Calcium-binding EF-hand OS=,52.17,0.0000004,
,CUFF.27349.1
         (67 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g013980.1 | telomerase activating protein Est1 | HC | chr2...    52   1e-07
Medtr3g102480.1 | hypothetical protein | LC | chr3:47233953-4723...    47   3e-06

>Medtr2g013980.1 | telomerase activating protein Est1 | HC |
            chr2:3860890-3866296 | 20130731
          Length = 1189

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 3    QQECKLTVVEMKVLQWLNGYTIHDRIMNDIFREKTRLTPIVEKMVE 48
            Q E +++V EM +L+W++G T HDRI ND   E+  + PIV+K+VE
Sbjct: 1081 QHENQVSVAEMMMLRWMSGKTRHDRIRNDTIGERVGVAPIVKKLVE 1126


>Medtr3g102480.1 | hypothetical protein | LC |
          chr3:47233953-47233488 | 20130731
          Length = 112

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 13 MKVLQWLNGYTIHDRIMNDIFREKTRLTPIVEKMVE 48
          M++L+W++G T HD+I ND  RE+  + PIVEK+VE
Sbjct: 1  MRILRWMSGKTRHDKIRNDTIRERMEVAPIVEKLVE 36