Miyakogusa Predicted Gene
- Lj1g3v1464140.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1464140.1 Non Characterized Hit- tr|C5WSW0|C5WSW0_SORBI
Putative uncharacterized protein Sb01g001150
OS=Sorghu,78.57,1e-18,SAM_DOMAIN,Sterile alpha motif domain;
SAM_1,Sterile alpha motif, type 1; STERILE ALPHA MOTIF (SAM)
,NODE_46709_length_1424_cov_20.514748.path2.1
(250 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-452022... 214 4e-56
Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-403415... 189 3e-48
Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-403415... 189 3e-48
Medtr7g021220.1 | SAM domain protein | HC | chr7:6680731-6682024... 73 2e-13
Medtr3g105470.1 | DNA cross-link repair protein pso2/SNM1, putat... 55 5e-08
>Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-45202207
| 20130731
Length = 231
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 154/270 (57%), Gaps = 59/270 (21%)
Query: 1 MTEVPAPEAQLTGGVTVAPN-KPSEPTATGSKRHRRPSVRLGEIGDQPNDSHPLRRXXXX 59
M EVP PE Q+ GG T A PSEP GSKR RRPSVRLG+IGDQP+DSHP R
Sbjct: 1 MEEVPPPEVQINGGATTAVTLPPSEPH--GSKRQRRPSVRLGDIGDQPSDSHPRR----- 53
Query: 60 XXXKSSWRLPFSNASGKHSKTRPLTNLTG---FGGTLEGDDDDVV--RWKLKDXXXXXXX 114
SWR N SGK SKTRPLTNLT F +E + D V+ WK+K
Sbjct: 54 --SSKSWRFGLGNVSGKPSKTRPLTNLTSVSDFDEDVETNTDGVIIGSWKVK-------- 103
Query: 115 XXXXXXXXXXNWVASSQIEG------------EDF--DAESPVLHSAENLGXXXXXXXXY 160
NWV+S EG DF D + S+ENLG
Sbjct: 104 --KGSKRPRSNWVSSRIEEGEDVDNDNEDDLYRDFEGDNSGSRIRSSENLGDF------- 154
Query: 161 RATLQHYHEENARDNKNGNGGGVRHGEDWIRIWLNGLGLGRYAPVFEIHEIDDEVLHLLT 220
D +N +GG GED +RIWLNGLGLGRYAPVF+IHE+DDEVL LLT
Sbjct: 155 -------------DARNEDGGRGSCGEDGVRIWLNGLGLGRYAPVFQIHEVDDEVLPLLT 201
Query: 221 LEDLKDMGINAVGSRRKLYCAIQKLGKGFS 250
LEDLKDMGINAVGSRRKLYCAIQKLGKGFS
Sbjct: 202 LEDLKDMGINAVGSRRKLYCAIQKLGKGFS 231
>Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-40341595
| 20130731
Length = 283
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 163/301 (54%), Gaps = 69/301 (22%)
Query: 1 MTEVPAPEAQLTGGVTVAPNKPSEPTATGSKRHRRPSVRLGEIG-DQPNDSHPLRRXXXX 59
M E+ E Q+ GG T+ N +EP G+KR RRPSVRLG+IG D P DSH R
Sbjct: 1 MAEIQPAEGQINGGGTLILNS-TEPI--GTKRQRRPSVRLGDIGVDPPYDSHARR----- 52
Query: 60 XXXKSSWRLPF--------SNASGKHSKTRPLTNLTG---FGGTL--EGDDDDVVR---W 103
SW+L F S ASGK SK RPLTNL+ F TL EG+ D V W
Sbjct: 53 --NNKSWKLSFDHQRKEKDSIASGKPSKIRPLTNLSSVGEFNETLDGEGNIDSTVAIGGW 110
Query: 104 KLKDXXXXXXXXXXXXXXXXXNWVASSQIEG-----------EDFD----------AESP 142
K+K+ NWV+ G ED D +ESP
Sbjct: 111 KVKESKKRGSVATKRVRS---NWVSRIDETGGGVVEEKYSGAEDVDDGYREFDVENSESP 167
Query: 143 V-----LHSAENLGXXXXXXXXYRATLQHYHEENARD--------NKNGNGGGVRHGEDW 189
+ +HS ENLG +R + + + + ++N N G +R GED
Sbjct: 168 LKEQSPIHSMENLGIDG-----HRRSFKSRDHNDGIELSGPSENGDRNDNVGRIRFGEDG 222
Query: 190 IRIWLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 249
IRIWLNGLGLGRYAPVFE+HE+DDEVL +LTLEDLKDMGINAVGSRRKLYCAIQKLGKGF
Sbjct: 223 IRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 282
Query: 250 S 250
S
Sbjct: 283 S 283
>Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-40341595
| 20130731
Length = 283
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 163/301 (54%), Gaps = 69/301 (22%)
Query: 1 MTEVPAPEAQLTGGVTVAPNKPSEPTATGSKRHRRPSVRLGEIG-DQPNDSHPLRRXXXX 59
M E+ E Q+ GG T+ N +EP G+KR RRPSVRLG+IG D P DSH R
Sbjct: 1 MAEIQPAEGQINGGGTLILNS-TEPI--GTKRQRRPSVRLGDIGVDPPYDSHARR----- 52
Query: 60 XXXKSSWRLPF--------SNASGKHSKTRPLTNLTG---FGGTL--EGDDDDVVR---W 103
SW+L F S ASGK SK RPLTNL+ F TL EG+ D V W
Sbjct: 53 --NNKSWKLSFDHQRKEKDSIASGKPSKIRPLTNLSSVGEFNETLDGEGNIDSTVAIGGW 110
Query: 104 KLKDXXXXXXXXXXXXXXXXXNWVASSQIEG-----------EDFD----------AESP 142
K+K+ NWV+ G ED D +ESP
Sbjct: 111 KVKESKKRGSVATKRVRS---NWVSRIDETGGGVVEEKYSGAEDVDDGYREFDVENSESP 167
Query: 143 V-----LHSAENLGXXXXXXXXYRATLQHYHEENARD--------NKNGNGGGVRHGEDW 189
+ +HS ENLG +R + + + + ++N N G +R GED
Sbjct: 168 LKEQSPIHSMENLGIDG-----HRRSFKSRDHNDGIELSGPSENGDRNDNVGRIRFGEDG 222
Query: 190 IRIWLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 249
IRIWLNGLGLGRYAPVFE+HE+DDEVL +LTLEDLKDMGINAVGSRRKLYCAIQKLGKGF
Sbjct: 223 IRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 282
Query: 250 S 250
S
Sbjct: 283 S 283
>Medtr7g021220.1 | SAM domain protein | HC | chr7:6680731-6682024 |
20130731
Length = 245
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 51/57 (89%)
Query: 193 WLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGF 249
WL LGL RYAPVFE+HE+DD++L LLTLEDLKDMGI+AVGSRRK+Y AI+KL KGF
Sbjct: 189 WLFDLGLSRYAPVFEMHEVDDDLLPLLTLEDLKDMGISAVGSRRKMYNAIEKLRKGF 245
>Medtr3g105470.1 | DNA cross-link repair protein pso2/SNM1, putative
| HC | chr3:48636150-48642452 | 20130731
Length = 671
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 193 WLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYCAIQKLGKGFS 250
W+ GLGL +Y VF E+D + L LT EDL +MGI A+G R+K+ A+ +L +G +
Sbjct: 186 WIRGLGLAKYEEVFVREEVDWDTLQWLTEEDLLNMGITALGPRKKIVHALSELRRGIT 243