Miyakogusa Predicted Gene

Lj1g3v1388160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1388160.1 Non Characterized Hit- tr|E1ZML2|E1ZML2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.2,1e-17,Sdh5,Protein of unknown function DUF339; PROTEIN
EMI5 HOMOLOG, MITOCHONDRIAL,NULL; YgfY-like,Protein,CUFF.27310.1
         (179 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g098480.1 | flavinator of succinate dehydrogenase | HC | c...   263   9e-71
Medtr8g096070.1 | TPR repeat region family protein | HC | chr8:4...   256   6e-69

>Medtr3g098480.1 | flavinator of succinate dehydrogenase | HC |
           chr3:44968494-44972350 | 20130731
          Length = 176

 Score =  263 bits (671), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 147/180 (81%), Gaps = 5/180 (2%)

Query: 1   MASLRRAAINIHRVINANKRNITASTTPLTSRPLYGYSKISPFTSYPQS-YEIDLSTEES 59
           MA++R+A IN+HR+IN+NK  IT+ST P     L+     +PFTS  QS   I+LS EES
Sbjct: 1   MATIRKAVINVHRLINSNKSIITSSTKPF----LHFRPPFAPFTSQSQSPVVINLSNEES 56

Query: 60  KRRSLNRLLYRSKQRGFLELDLVLGKWVEDNIHSLDENRIKSLIHVLDLENPDLWKWLSG 119
           KRR  NRLLYRSKQRGFLELDLVLGKWVEDNIH LDENRIK+LIHVLDLENPDLWKW+SG
Sbjct: 57  KRRLFNRLLYRSKQRGFLELDLVLGKWVEDNIHKLDENRIKALIHVLDLENPDLWKWISG 116

Query: 120 QEQPPESISANPVFAAIKEKLMKNLDSHAAPEVRAMPGQPWVRGWDDIKKGPGGPVTGNQ 179
           QEQPPES+  NPVFAA++ K+MKNLDSH+APE RA  GQPWVRGWDDIKKG   P +GNQ
Sbjct: 117 QEQPPESVDVNPVFAALRGKVMKNLDSHSAPETRATLGQPWVRGWDDIKKGRDAPASGNQ 176


>Medtr8g096070.1 | TPR repeat region family protein | HC |
           chr8:40070846-40073727 | 20130731
          Length = 180

 Score =  256 bits (655), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 128/185 (69%), Positives = 152/185 (82%), Gaps = 11/185 (5%)

Query: 1   MASL--RRAAINIHRVINANKRNITASTTPLTSRPLYGYSKISPFTSYP----QSYEIDL 54
           MASL  +R A+++HRV+N+++     STT L  RP++GY KISPFTS+      S  IDL
Sbjct: 1   MASLLVKRVAVSVHRVLNSSQ---PQSTTLL--RPVFGYHKISPFTSHSDSDNNSLHIDL 55

Query: 55  STEESKRRSLNRLLYRSKQRGFLELDLVLGKWVEDNIHSLDENRIKSLIHVLDLENPDLW 114
           S +ESKR   NRLLYRSKQRGFLELDLVLGKWV++NIHSLDEN I+SLIH+LD+ENPDLW
Sbjct: 56  SNQESKRTLFNRLLYRSKQRGFLELDLVLGKWVQNNIHSLDENHIRSLIHLLDVENPDLW 115

Query: 115 KWLSGQEQPPESISANPVFAAIKEKLMKNLDSHAAPEVRAMPGQPWVRGWDDIKKGPGGP 174
           KWLSGQEQPPESIS NPVFAA++E +MKNLDSH++PE RA PG+PWVRGWDDI+K  GGP
Sbjct: 116 KWLSGQEQPPESISINPVFAAVQEGVMKNLDSHSSPETRATPGKPWVRGWDDIQKFRGGP 175

Query: 175 VTGNQ 179
             GNQ
Sbjct: 176 SAGNQ 180