Miyakogusa Predicted Gene

Lj1g3v1386410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1386410.1 tr|G7J2P6|G7J2P6_MEDTR Cleft lip and palate
transmembrane protein-like protein OS=Medicago
truncatul,86.43,0,seg,NULL; CLEFT LIP AND PALATE ASSOCIATED
TRANSMEMBRANE PROTEIN-RELATED,Cleft lip and palate
transme,CUFF.27298.1
         (589 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g098210.1 | cleft lip and palate transmembrane protein | H...   957   0.0  

>Medtr3g098210.1 | cleft lip and palate transmembrane protein | HC |
           chr3:44821299-44813725 | 20130731
          Length = 591

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/545 (84%), Positives = 491/545 (90%), Gaps = 6/545 (1%)

Query: 31  LTGIIRMVVFWYFASKFFSP---KKPV-DPSVQISNLFPKSQPLDMWLYVSEHEKFNDFG 86
           LTGIIRMVVFWYFASKFFSP   K P  +P++ ISNLF K+QP+DMW+Y++E++KFN+FG
Sbjct: 29  LTGIIRMVVFWYFASKFFSPASKKSPNNEPAILISNLFHKAQPMDMWVYLTENDKFNEFG 88

Query: 87  SESALVWHETNIPYAVWGPESTRTLTLKYPPTESLKHNGSLFAHVYFAHSGFSPDPSDPE 146
           +ESALVWHETNI YA WGPE+TRTLTL YPPTESLKHNGSL+AHV+FA SG+SPDPSDPE
Sbjct: 89  NESALVWHETNILYAEWGPENTRTLTLNYPPTESLKHNGSLYAHVFFAQSGYSPDPSDPE 148

Query: 147 YQPQAAFGRTHPVVVYFPXXXXXXXXXXXXXXXDSVEDQATTKVVDNAEDDSKDDGPEEW 206
           YQPQAAFGRTHPVV+Y P               DS E Q   +V+D+ EDDSKD+GP EW
Sbjct: 149 YQPQAAFGRTHPVVIYKPKSKADKRKSLLGA--DSSEGQVAPEVIDDIEDDSKDEGPVEW 206

Query: 207 ISYWKPNITINLVADFTQYPKTGIPPNIAPYMNIDPITGNYYPTIYFNEFWLLRDKLIAX 266
            +YWKPNITINL+ADFTQYP TGIPPNIAPY+NIDPITGNYYPTI+FNEFWLLRDKLIA 
Sbjct: 207 RAYWKPNITINLIADFTQYPNTGIPPNIAPYLNIDPITGNYYPTIFFNEFWLLRDKLIAL 266

Query: 267 XXXXXXXXXXXXXGPISMTKWQLFLQIDQSFQIHRSYGSMLEGEADELKRVFLEGNPYLL 326
                        GPISMTKWQLF+QIDQSFQIHRSYGSML+GEADELKRVFLEGNPYLL
Sbjct: 267 NETVTELTLNLEVGPISMTKWQLFMQIDQSFQIHRSYGSMLDGEADELKRVFLEGNPYLL 326

Query: 327 GITMVVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFICQLIIFLYLLDNDTSW 386
           GITM+VSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFICQLIIFLYLLDNDTSW
Sbjct: 327 GITMIVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFICQLIIFLYLLDNDTSW 386

Query: 387 MILASSGIGLVIEFWKIGKAMHIEIDRTGRIPMLRFRDRESYAGNKTKEYDDIAMKYLTY 446
           MIL SSG+GLVIEFWKIGKAMHIEIDRTGRIPMLRFRDRESYAGNKTKEYDDIAMKYLTY
Sbjct: 387 MILLSSGVGLVIEFWKIGKAMHIEIDRTGRIPMLRFRDRESYAGNKTKEYDDIAMKYLTY 446

Query: 447 VLFLLAAGFAAYSLMYERHRSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPW 506
           VLFLLAAGFA YSL YERH+SWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPW
Sbjct: 447 VLFLLAAGFAVYSLKYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPW 506

Query: 507 RQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYVYQRWIYPVDKKRVNEFGFG 566
           RQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYVYQRWIYPVDKKRVNEFGFG
Sbjct: 507 RQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYVYQRWIYPVDKKRVNEFGFG 566

Query: 567 GEDDQ 571
           GEDDQ
Sbjct: 567 GEDDQ 571