Miyakogusa Predicted Gene

Lj1g3v1384120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1384120.1 Non Characterized Hit- tr|K4B349|K4B349_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,47.01,1e-18,seg,NULL; coiled-coil,NULL,CUFF.27254.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g086780.1 | transmembrane protein, putative | HC | chr4:34...   104   2e-23
Medtr3g101240.1 | transmembrane protein, putative | HC | chr3:46...    94   3e-20

>Medtr4g086780.1 | transmembrane protein, putative | HC |
           chr4:34023803-34023142 | 20130731
          Length = 131

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 62/80 (77%), Gaps = 5/80 (6%)

Query: 2   SVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGGSYDIESWVETKCSSCVGGRIXXXX 61
           SVGPVIAVLAVITVLG+IAGMIGRLCSGRRVMG+ G YDIESWVETKCSSCVGGRI    
Sbjct: 28  SVGPVIAVLAVITVLGIIAGMIGRLCSGRRVMGY-GEYDIESWVETKCSSCVGGRIVPPP 86

Query: 62  XXXXDLN----GGEDAPPVE 77
                +N      E++P VE
Sbjct: 87  PPRPPVNEPEAAAENSPAVE 106


>Medtr3g101240.1 | transmembrane protein, putative | HC |
           chr3:46582029-46582634 | 20130731
          Length = 131

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 2   SVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGGSYDIESWVETKCSSCVGGRIXXXX 61
           S+GP+I VL VI VLG+IA MIGRLCSGRR+MGH G YDIESW E KCS+C+ GRI    
Sbjct: 36  SIGPLIGVLVVIIVLGIIAVMIGRLCSGRRIMGH-GQYDIESWAEKKCSTCIDGRINHSI 94

Query: 62  XXXXDLNGGEDAP--PVEIPQEMKEEEH 87
               +       P  P+   QE ++EE 
Sbjct: 95  PMRVNETSTTSLPATPINTQQETRQEEQ 122