Miyakogusa Predicted Gene

Lj1g3v1376630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1376630.1 tr|A4S2T1|A4S2T1_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_94724,31.46,2e-18,ZINC FINGER, CCHC DOMAIN CONTAINING
11,NULL; POLY(A) POLYMERASE CID (PAP)-RELATED,NULL; seg,NULL;
Nu,CUFF.27242.1
         (272 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c...   310   8e-85
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c...   237   1e-62
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c...   167   9e-42
Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ...   108   5e-24
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ...   108   5e-24
Medtr3g097090.3 | nucleotidyltransferase family protein | HC | c...    95   9e-20
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c...    84   1e-16

>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 580

 Score =  310 bits (795), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 152/243 (62%), Positives = 177/243 (72%)

Query: 14  TEQAQLAVDSTKQDLLKMAEKLESEILAKIKFIPTHVIGLDGLLCDTYARMCPKPIDYFN 73
           ++Q     +  ++D LK AEKLESE LAKI F  T ++ LD LLCDTY R CPKP+ Y N
Sbjct: 7   SKQTLTKSNEEEEDHLKTAEKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHYQN 66

Query: 74  RRDLVRIFNLMTKEIYGNGYNTPVVEGYGSFVMDMFTDESDLDLSINFHDPSEFSRTKKI 133
           RRDL+RIFN+M KEIYGN   +PVVE YGSFVMD+F + SDLDLSINF D  E +R KKI
Sbjct: 67  RRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMKKI 126

Query: 134 KTLQRFKNKLHSLERLEHVTGIQAILVATVPIVKVIDKGTGIECDLSVNNWDGXXXXXXX 193
           + L++F  KL S ++  HVT ++ IL A VPIVKV D GTG+ECDLSV N DG       
Sbjct: 127 QVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFI 186

Query: 194 XXXXXXDERFRKLCFLMKSWAKAHDINSSKDGTLNSLSIVLFVAFHLQTCNPPILPPFSI 253
                 D RF+KLC LMKSWAKAH+INSSKD TLNSLSIV FVAFH QTC+PPILPPFS 
Sbjct: 187 RAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPPFST 246

Query: 254 LLK 256
           LLK
Sbjct: 247 LLK 249


>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 548

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/245 (50%), Positives = 149/245 (60%), Gaps = 32/245 (13%)

Query: 12  KSTEQAQLAVDSTKQDLLKMAEKLESEILAKIKFIPTHVIGLDGLLCDTYARMCPKPIDY 71
           + ++Q     +  ++D LK AEKLESE LAKI F  T ++ LD LLCDTY R CPKP+ Y
Sbjct: 5   EESKQTLTKSNEEEEDHLKTAEKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHY 64

Query: 72  FNRRDLVRIFNLMTKEIYGNGYNTPVVEGYGSFVMDMFTDESDLDLSINFHDPSEFSRTK 131
            NRRDL+RIFN+M KEIYGN   +PVVE YGSFVMD+F + SDLDLSINF D  E +R K
Sbjct: 65  QNRRDLIRIFNMMAKEIYGNSMVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMK 124

Query: 132 KIKTLQRFKNKLHSLERLEHVTGIQAILVATVPIVKVIDKGTGIECDLSVNNWDGXXXXX 191
           KI+ L++F  KL S ++  HVT ++ IL A VPIVKV D GTG+ECDLSV N DG     
Sbjct: 125 KIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSH 184

Query: 192 XXXXXXXXDERFRKLCFLMKSWAKAHDINSSKDGTLNSLSIVLFVAFHLQTCNPPILPPF 251
                   D RF+KLC L                                TC+PPILPPF
Sbjct: 185 FIRAISAIDGRFQKLCLL--------------------------------TCDPPILPPF 212

Query: 252 SILLK 256
           S LLK
Sbjct: 213 STLLK 217


>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 458

 Score =  167 bits (423), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 92/126 (73%)

Query: 131 KKIKTLQRFKNKLHSLERLEHVTGIQAILVATVPIVKVIDKGTGIECDLSVNNWDGXXXX 190
           KKI+ L++F  KL S ++  HVT ++ IL A VPIVKV D GTG+ECDLSV N DG    
Sbjct: 2   KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61

Query: 191 XXXXXXXXXDERFRKLCFLMKSWAKAHDINSSKDGTLNSLSIVLFVAFHLQTCNPPILPP 250
                    D RF+KLC LMKSWAKAH+INSSKD TLNSLSIV FVAFH QTC+PPILPP
Sbjct: 62  HFIRAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPP 121

Query: 251 FSILLK 256
           FS LLK
Sbjct: 122 FSTLLK 127


>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30854466-30848016 | 20130731
          Length = 479

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 78/154 (50%)

Query: 98  VEGYGSFVMDMFTDESDLDLSINFHDPSEFSRTKKIKTLQRFKNKLHSLERLEHVTGIQA 157
           VE +GS V ++FT   DLD+SI   + S      + +      N L +L         Q 
Sbjct: 50  VEPFGSVVSNLFTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQF 109

Query: 158 ILVATVPIVKVIDKGTGIECDLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAH 217
           I  A VPI+K      GI CD+S+NN  G             D RF  L  ++K WAKAH
Sbjct: 110 IPKARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAH 169

Query: 218 DINSSKDGTLNSLSIVLFVAFHLQTCNPPILPPF 251
            IN+SK G+ NS ++ L V FHLQTC P ILPP 
Sbjct: 170 KINNSKTGSFNSFTLSLLVIFHLQTCAPAILPPL 203


>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30856016-30848016 | 20130731
          Length = 479

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 78/154 (50%)

Query: 98  VEGYGSFVMDMFTDESDLDLSINFHDPSEFSRTKKIKTLQRFKNKLHSLERLEHVTGIQA 157
           VE +GS V ++FT   DLD+SI   + S      + +      N L +L         Q 
Sbjct: 50  VEPFGSVVSNLFTRWGDLDISIQLLNGSHIGAAGRKQKQTLLVNFLKALRMKGGYMNFQF 109

Query: 158 ILVATVPIVKVIDKGTGIECDLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAH 217
           I  A VPI+K      GI CD+S+NN  G             D RF  L  ++K WAKAH
Sbjct: 110 IPKARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAH 169

Query: 218 DINSSKDGTLNSLSIVLFVAFHLQTCNPPILPPF 251
            IN+SK G+ NS ++ L V FHLQTC P ILPP 
Sbjct: 170 KINNSKTGSFNSFTLSLLVIFHLQTCAPAILPPL 203


>Medtr3g097090.3 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 426

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 63/126 (50%), Gaps = 32/126 (25%)

Query: 131 KKIKTLQRFKNKLHSLERLEHVTGIQAILVATVPIVKVIDKGTGIECDLSVNNWDGXXXX 190
           KKI+ L++F  KL S ++  HVT ++ IL A VPIVKV D GTG+ECDLSV N DG    
Sbjct: 2   KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61

Query: 191 XXXXXXXXXDERFRKLCFLMKSWAKAHDINSSKDGTLNSLSIVLFVAFHLQTCNPPILPP 250
                    D RF+KLC L                                TC+PPILPP
Sbjct: 62  HFIRAISAIDGRFQKLCLL--------------------------------TCDPPILPP 89

Query: 251 FSILLK 256
           FS LLK
Sbjct: 90  FSTLLK 95


>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
           chr8:12908258-12903936 | 20130731
          Length = 367

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 101 YGSFVMDMFTDESDLDLSINFHDPSEFSRTKKIKTLQRFKNKLHSLERLEHVTGIQAILV 160
           YGS        +SD+D+ +   D    +   K K + +  + L S    +++  +QA+  
Sbjct: 87  YGSCASSFGVSKSDIDVCLAIQD----ADVDKSKIIMKLADILQS----DNLQNVQALTR 138

Query: 161 ATVPIVKVIDKGTGIECDLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHDIN 220
           A VPIVK++D  TGI CD+ +NN                D R R+L F++K WAK+  +N
Sbjct: 139 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQLAFIIKHWAKSRGVN 198

Query: 221 SSKDGTLNSLSIVLFVAFHLQTCNPPILP 249
            +  GTL+S + VL     LQ   P ILP
Sbjct: 199 ETYHGTLSSYAYVLMCVHFLQQQRPAILP 227