Miyakogusa Predicted Gene
- Lj1g3v1374530.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1374530.3 Non Characterized Hit- tr|C5X6K7|C5X6K7_SORBI
Putative uncharacterized protein Sb02g012440
OS=Sorghu,31.11,1e-18,ZINC FINGER, CCHC DOMAIN CONTAINING 11,NULL;
POLY(A) POLYMERASE CID (PAP)-RELATED,NULL; seg,NULL; no,CUFF.27270.3
(355 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c... 345 3e-95
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c... 281 6e-76
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c... 241 1e-63
Medtr3g097090.3 | nucleotidyltransferase family protein | HC | c... 177 2e-44
Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ... 107 2e-23
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ... 107 2e-23
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c... 75 1e-13
>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 580
Score = 345 bits (886), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 174/297 (58%), Positives = 210/297 (70%), Gaps = 2/297 (0%)
Query: 41 EKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNS 100
EKLESE L KI F T + +LD LLCDTY R CPK + NR L+RIFN++A+E+YGNS
Sbjct: 26 EKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNS 85
Query: 101 HDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSV 160
PVVE +GSFVMD+F SDLDLSINF E + +KI+ L +F KL S ++ G V
Sbjct: 86 MVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHV 145
Query: 161 TCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKS 220
T ++ + A+VPI+K T+ TG+EC+LSV N DG D RF+KLC LMKS
Sbjct: 146 TALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLLMKS 205
Query: 221 WAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYR 280
WAKAH I SSKD LN LSI+ FVAFH QTC+PPILPPFS LLK+GAD+ SVTK V+TY
Sbjct: 206 WAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPPFSTLLKEGADLESVTKAVKTYT 265
Query: 281 NYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYWNHHYSMRVTKF 337
NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y GSW+LK W YSM V F
Sbjct: 266 NYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNGSWVLKKW--RYSMSVEDF 320
>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 548
Score = 281 bits (720), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 185/297 (62%), Gaps = 34/297 (11%)
Query: 41 EKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNS 100
EKLESE L KI F T + +LD LLCDTY R CPK + NR L+RIFN++A+E+YGNS
Sbjct: 26 EKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNS 85
Query: 101 HDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSV 160
PVVE +GSFVMD+F SDLDLSINF E + +KI+ L +F KL S ++ G V
Sbjct: 86 MVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHV 145
Query: 161 TCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKS 220
T ++ + A+VPI+K T+ TG+EC+LSV N DG D RF+KLC L
Sbjct: 146 TALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLL--- 202
Query: 221 WAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYR 280
TC+PPILPPFS LLK+GAD+ SVTK V+TY
Sbjct: 203 -----------------------------TCDPPILPPFSTLLKEGADLESVTKAVKTYT 233
Query: 281 NYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYWNHHYSMRVTKF 337
NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y GSW+LK W YSM V F
Sbjct: 234 NYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNGSWVLKKW--RYSMSVEDF 288
>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 458
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/199 (58%), Positives = 142/199 (71%), Gaps = 2/199 (1%)
Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
+KI+ L +F KL S ++ G VT ++ + A+VPI+K T+ TG+EC+LSV N DG
Sbjct: 2 KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61
Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPP 258
D RF+KLC LMKSWAKAH I SSKD LN LSI+ FVAFH QTC+PPILPP
Sbjct: 62 HFIRAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPP 121
Query: 259 FSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYE 318
FS LLK+GAD+ SVTK V+TY NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y
Sbjct: 122 FSTLLKEGADLESVTKAVKTYTNYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYN 181
Query: 319 GSWILKYWNHHYSMRVTKF 337
GSW+LK W YSM V F
Sbjct: 182 GSWVLKKWR--YSMSVEDF 198
>Medtr3g097090.3 | nucleotidyltransferase family protein | HC |
chr3:44490299-44481962 | 20130731
Length = 426
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 117/199 (58%), Gaps = 34/199 (17%)
Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
+KI+ L +F KL S ++ G VT ++ + A+VPI+K T+ TG+EC+LSV N DG
Sbjct: 2 KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61
Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPP 258
D RF+KLC L TC+PPILPP
Sbjct: 62 HFIRAISAIDGRFQKLCLL--------------------------------TCDPPILPP 89
Query: 259 FSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYE 318
FS LLK+GAD+ SVTK V+TY NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y
Sbjct: 90 FSTLLKEGADLESVTKAVKTYTNYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYN 149
Query: 319 GSWILKYWNHHYSMRVTKF 337
GSW+LK W YSM V F
Sbjct: 150 GSWVLKKWR--YSMSVEDF 166
>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
chr3:30854466-30848016 | 20130731
Length = 479
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 125/282 (44%), Gaps = 25/282 (8%)
Query: 59 SELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDIPVVEGHGSFVMDMFT 118
S L +L D + P + D R+ ++ AE + S VE GS V ++FT
Sbjct: 5 SMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESV--ESLRGATVEPFGSVVSNLFT 62
Query: 119 NVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
DLD+SI + + K K L + L +L +G Q A VPI+KF
Sbjct: 63 RWGDLDISIQLLNGSHIGAAGRKQKQTL-LVNFLKALRMKGGYMNFQFIPKARVPILKFK 121
Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
GI C++S+NN G D RF L ++K WAKAH I +SK G N
Sbjct: 122 SVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFNS 181
Query: 238 LSIILFVAFHLQTCNPPILPPFSILLK------------DGADVMSVTKIVETYR---NY 282
++ L V FHLQTC P ILPP + D ++++ T R N
Sbjct: 182 FTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISNK 241
Query: 283 GKQ-NKESLAKLFITLLVKLASVESLW--EQGICASVYEGSW 321
+ N++SL +LF+ K A ++ W E GIC Y G W
Sbjct: 242 SRPINRKSLPELFVDFQRKFAQIDE-WASEIGIC--TYSGQW 280
>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
chr3:30856016-30848016 | 20130731
Length = 479
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 125/282 (44%), Gaps = 25/282 (8%)
Query: 59 SELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDIPVVEGHGSFVMDMFT 118
S L +L D + P + D R+ ++ AE + S VE GS V ++FT
Sbjct: 5 SMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESV--ESLRGATVEPFGSVVSNLFT 62
Query: 119 NVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
DLD+SI + + K K L + L +L +G Q A VPI+KF
Sbjct: 63 RWGDLDISIQLLNGSHIGAAGRKQKQTL-LVNFLKALRMKGGYMNFQFIPKARVPILKFK 121
Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
GI C++S+NN G D RF L ++K WAKAH I +SK G N
Sbjct: 122 SVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFNS 181
Query: 238 LSIILFVAFHLQTCNPPILPPFSILLK------------DGADVMSVTKIVETYR---NY 282
++ L V FHLQTC P ILPP + D ++++ T R N
Sbjct: 182 FTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISNK 241
Query: 283 GKQ-NKESLAKLFITLLVKLASVESLW--EQGICASVYEGSW 321
+ N++SL +LF+ K A ++ W E GIC Y G W
Sbjct: 242 SRPINRKSLPELFVDFQRKFAQIDE-WASEIGIC--TYSGQW 280
>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
chr8:12908258-12903936 | 20130731
Length = 367
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 22/265 (8%)
Query: 38 TKQEKLESEILRKIKFTQTCVSELDGL---LCDTYVRMCPKEIDSFNRITLLRIFNLVAE 94
++ +L S+ R K C ++D Y + P E + + LL + E
Sbjct: 17 SRGNQLLSQRARTFKRQMMCRRDIDSFSVPFLSIYESLIPPEEEKLKQNQLLGLL----E 72
Query: 95 ELYGNSHDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSL 154
+L + + +GS + SD+D+ + +++ +K K +++ D L S
Sbjct: 73 KLVCKEWPMARLYLYGSCASSFGVSKSDIDVCLAI----QDADVDKSKIIMKLADILQS- 127
Query: 155 EREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKL 214
++ VQ+ A VPI+K + VTGI C++ +NN D R R+L
Sbjct: 128 ---DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQL 184
Query: 215 CFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILP------PFSILLKDGAD 268
F++K WAK+ + + G L+ + +L LQ P ILP P + D D
Sbjct: 185 AFIIKHWAKSRGVNETYHGTLSSYAYVLMCVHFLQQQRPAILPCLQGMNPTYSVRVDNVD 244
Query: 269 VMSVTKIVETYRNYGKQNKESLAKL 293
+ VE ++G+ NK+++A L
Sbjct: 245 CAFFDQ-VEKLGHFGRHNKDTIAHL 268