Miyakogusa Predicted Gene

Lj1g3v1374530.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1374530.2 Non Characterized Hit- tr|D8SJR3|D8SJR3_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.44,4e-18,coiled-coil,NULL; ZINC FINGER, CCHC DOMAIN
CONTAINING 11,NULL; POLY(A) POLYMERASE CID (PAP)-RELATED,,CUFF.27270.2
         (573 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g097090.1 | nucleotidyltransferase family protein | HC | c...   425   e-119
Medtr3g097090.4 | nucleotidyltransferase family protein | HC | c...   362   e-100
Medtr3g097090.2 | nucleotidyltransferase family protein | HC | c...   320   3e-87
Medtr3g097090.3 | nucleotidyltransferase family protein | HC | c...   256   4e-68
Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC ...   122   7e-28
Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC ...   122   7e-28
Medtr8g033420.1 | nucleotidyltransferase family protein | HC | c...    79   2e-14

>Medtr3g097090.1 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 580

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/366 (59%), Positives = 261/366 (71%), Gaps = 4/366 (1%)

Query: 41  EKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNS 100
           EKLESE L KI F  T + +LD LLCDTY R CPK +   NR  L+RIFN++A+E+YGNS
Sbjct: 26  EKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNS 85

Query: 101 HDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSV 160
              PVVE +GSFVMD+F   SDLDLSINF    E +  +KI+ L +F  KL S ++ G V
Sbjct: 86  MVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHV 145

Query: 161 TCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKS 220
           T ++  + A+VPI+K T+  TG+EC+LSV N DG             D RF+KLC LMKS
Sbjct: 146 TALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLLMKS 205

Query: 221 WAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYR 280
           WAKAH I SSKD  LN LSI+ FVAFH QTC+PPILPPFS LLK+GAD+ SVTK V+TY 
Sbjct: 206 WAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPPFSTLLKEGADLESVTKAVKTYT 265

Query: 281 NYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYWNHHYSMRVEDFMDR 340
           NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y GSW+LK W   YSM VEDF D 
Sbjct: 266 NYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNGSWVLKKW--RYSMSVEDFTDL 323

Query: 341 SQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGIQLVDFLFGTHTVASLGVGGTSY 400
           SQNV+RAV     +TIY+CIH SI YLS+FLN +IQGI+L+D LFG     +LGV GTS 
Sbjct: 324 SQNVARAVRAEGFKTIYKCIHNSIDYLSRFLNGEIQGIELMDHLFGKPMAFTLGVEGTST 383

Query: 401 --ISGN 404
             I+GN
Sbjct: 384 SNINGN 389


>Medtr3g097090.4 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 548

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/366 (52%), Positives = 236/366 (64%), Gaps = 36/366 (9%)

Query: 41  EKLESEILRKIKFTQTCVSELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNS 100
           EKLESE L KI F  T + +LD LLCDTY R CPK +   NR  L+RIFN++A+E+YGNS
Sbjct: 26  EKLESEKLAKINFNSTRIVDLDALLCDTYDRDCPKPVHYQNRRDLIRIFNMMAKEIYGNS 85

Query: 101 HDIPVVEGHGSFVMDMFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSV 160
              PVVE +GSFVMD+F   SDLDLSINF    E +  +KI+ L +F  KL S ++ G V
Sbjct: 86  MVSPVVEEYGSFVMDIFNERSDLDLSINFSDSIEINRMKKIQVLRKFSKKLRSFQKSGHV 145

Query: 161 TCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKS 220
           T ++  + A+VPI+K T+  TG+EC+LSV N DG             D RF+KLC L   
Sbjct: 146 TALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKSHFIRAISAIDGRFQKLCLL--- 202

Query: 221 WAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPPFSILLKDGADVMSVTKIVETYR 280
                                        TC+PPILPPFS LLK+GAD+ SVTK V+TY 
Sbjct: 203 -----------------------------TCDPPILPPFSTLLKEGADLESVTKAVKTYT 233

Query: 281 NYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYEGSWILKYWNHHYSMRVEDFMDR 340
           NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y GSW+LK W   YSM VEDF D 
Sbjct: 234 NYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYNGSWVLKKW--RYSMSVEDFTDL 291

Query: 341 SQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGIQLVDFLFGTHTVASLGVGGTSY 400
           SQNV+RAV     +TIY+CIH SI YLS+FLN +IQGI+L+D LFG     +LGV GTS 
Sbjct: 292 SQNVARAVRAEGFKTIYKCIHNSIDYLSRFLNGEIQGIELMDHLFGKPMAFTLGVEGTST 351

Query: 401 --ISGN 404
             I+GN
Sbjct: 352 SNINGN 357


>Medtr3g097090.2 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 458

 Score =  320 bits (819), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/268 (59%), Positives = 193/268 (72%), Gaps = 4/268 (1%)

Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
           +KI+ L +F  KL S ++ G VT ++  + A+VPI+K T+  TG+EC+LSV N DG    
Sbjct: 2   KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61

Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPP 258
                    D RF+KLC LMKSWAKAH I SSKD  LN LSI+ FVAFH QTC+PPILPP
Sbjct: 62  HFIRAISAIDGRFQKLCLLMKSWAKAHNINSSKDATLNSLSIVSFVAFHFQTCDPPILPP 121

Query: 259 FSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYE 318
           FS LLK+GAD+ SVTK V+TY NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y 
Sbjct: 122 FSTLLKEGADLESVTKAVKTYTNYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYN 181

Query: 319 GSWILKYWNHHYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGI 378
           GSW+LK W   YSM VEDF D SQNV+RAV     +TIY+CIH SI YLS+FLN +IQGI
Sbjct: 182 GSWVLKKWR--YSMSVEDFTDLSQNVARAVRAEGFKTIYKCIHNSIDYLSRFLNGEIQGI 239

Query: 379 QLVDFLFGTHTVASLGVGGTSY--ISGN 404
           +L+D LFG     +LGV GTS   I+GN
Sbjct: 240 ELMDHLFGKPMAFTLGVEGTSTSNINGN 267


>Medtr3g097090.3 | nucleotidyltransferase family protein | HC |
           chr3:44490299-44481962 | 20130731
          Length = 426

 Score =  256 bits (654), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 135/268 (50%), Positives = 168/268 (62%), Gaps = 36/268 (13%)

Query: 139 EKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFTERVTGIECNLSVNNWDGXXXX 198
           +KI+ L +F  KL S ++ G VT ++  + A+VPI+K T+  TG+EC+LSV N DG    
Sbjct: 2   KKIQVLRKFSKKLRSFQKSGHVTALEVILSAKVPIVKVTDIGTGVECDLSVENRDGIAKS 61

Query: 199 XXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNFLSIILFVAFHLQTCNPPILPP 258
                    D RF+KLC L                                TC+PPILPP
Sbjct: 62  HFIRAISAIDGRFQKLCLL--------------------------------TCDPPILPP 89

Query: 259 FSILLKDGADVMSVTKIVETYRNYGKQNKESLAKLFITLLVKLASVESLWEQGICASVYE 318
           FS LLK+GAD+ SVTK V+TY NYG +NK+SLA LF+TLLVKLASVE+LW+ G C S Y 
Sbjct: 90  FSTLLKEGADLESVTKAVKTYTNYGNKNKQSLAHLFVTLLVKLASVENLWQNGYCTSSYN 149

Query: 319 GSWILKYWNHHYSMRVEDFMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQIQGI 378
           GSW+LK W   YSM VEDF D SQNV+RAV     +TIY+CIH SI YLS+FLN +IQGI
Sbjct: 150 GSWVLKKWR--YSMSVEDFTDLSQNVARAVRAEGFKTIYKCIHNSIDYLSRFLNGEIQGI 207

Query: 379 QLVDFLFGTHTVASLGVGGTSY--ISGN 404
           +L+D LFG     +LGV GTS   I+GN
Sbjct: 208 ELMDHLFGKPMAFTLGVEGTSTSNINGN 235


>Medtr3g068215.2 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30854466-30848016 | 20130731
          Length = 479

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 146/338 (43%), Gaps = 26/338 (7%)

Query: 59  SELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDIPVVEGHGSFVMDMFT 118
           S L  +L D    + P + D   R+ ++      AE +   S     VE  GS V ++FT
Sbjct: 5   SMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESV--ESLRGATVEPFGSVVSNLFT 62

Query: 119 NVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
              DLD+SI   +     +   K K  L   + L +L  +G     Q    A VPI+KF 
Sbjct: 63  RWGDLDISIQLLNGSHIGAAGRKQKQTL-LVNFLKALRMKGGYMNFQFIPKARVPILKFK 121

Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
               GI C++S+NN  G             D RF  L  ++K WAKAH I +SK G  N 
Sbjct: 122 SVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFNS 181

Query: 238 LSIILFVAFHLQTCNPPILPPFSILL------------KDGADVMSVTKIVETYRNYGKQ 285
            ++ L V FHLQTC P ILPP   +              D  ++++ T      R    +
Sbjct: 182 FTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISNK 241

Query: 286 ----NKESLAKLFITLLVKLASVESLWEQGICASVYEGSW-----ILKYWNHHYSMRVED 336
               N++SL +LF+    K A ++  W   I    Y G W      +++    Y++ VED
Sbjct: 242 SRPINRKSLPELFVDFQRKFAQIDE-WASEIGICTYSGQWEQIKNNMRWLPKTYAIFVED 300

Query: 337 FMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQ 374
             ++ +N  R+V   +++ I      + S L     NQ
Sbjct: 301 PFEQPENSGRSVSAKQLKKIAEAFVGTYSLLISKNQNQ 338


>Medtr3g068215.1 | poly(A) RNA polymerase GLD2-like protein | HC |
           chr3:30856016-30848016 | 20130731
          Length = 479

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 146/338 (43%), Gaps = 26/338 (7%)

Query: 59  SELDGLLCDTYVRMCPKEIDSFNRITLLRIFNLVAEELYGNSHDIPVVEGHGSFVMDMFT 118
           S L  +L D    + P + D   R+ ++      AE +   S     VE  GS V ++FT
Sbjct: 5   SMLGVVLTDILRMVTPSQEDWEIRLAIINDLRSAAESV--ESLRGATVEPFGSVVSNLFT 62

Query: 119 NVSDLDLSINF-HAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIKFT 177
              DLD+SI   +     +   K K  L   + L +L  +G     Q    A VPI+KF 
Sbjct: 63  RWGDLDISIQLLNGSHIGAAGRKQKQTL-LVNFLKALRMKGGYMNFQFIPKARVPILKFK 121

Query: 178 ERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGILNF 237
               GI C++S+NN  G             D RF  L  ++K WAKAH I +SK G  N 
Sbjct: 122 SVRQGISCDVSINNLPGLMKSKFLLWINRIDGRFHDLVVVVKEWAKAHKINNSKTGSFNS 181

Query: 238 LSIILFVAFHLQTCNPPILPPFSILL------------KDGADVMSVTKIVETYRNYGKQ 285
            ++ L V FHLQTC P ILPP   +              D  ++++ T      R    +
Sbjct: 182 FTLSLLVIFHLQTCAPAILPPLKDIYPYNMVDELRGVRADAENLIAETCAANINRFISNK 241

Query: 286 ----NKESLAKLFITLLVKLASVESLWEQGICASVYEGSW-----ILKYWNHHYSMRVED 336
               N++SL +LF+    K A ++  W   I    Y G W      +++    Y++ VED
Sbjct: 242 SRPINRKSLPELFVDFQRKFAQIDE-WASEIGICTYSGQWEQIKNNMRWLPKTYAIFVED 300

Query: 337 FMDRSQNVSRAVGTAKVETIYRCIHKSISYLSQFLNNQ 374
             ++ +N  R+V   +++ I      + S L     NQ
Sbjct: 301 PFEQPENSGRSVSAKQLKKIAEAFVGTYSLLISKNQNQ 338


>Medtr8g033420.1 | nucleotidyltransferase family protein | HC |
           chr8:12908258-12903936 | 20130731
          Length = 367

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 40/314 (12%)

Query: 72  MCPKEIDSFNRITLLRIFNLV---AEELYGNSHDIPVVEG-------------HGSFVMD 115
           MC ++IDSF+ +  L I+  +    EE    +  + ++E              +GS    
Sbjct: 35  MCRRDIDSFS-VPFLSIYESLIPPEEEKLKQNQLLGLLEKLVCKEWPMARLYLYGSCASS 93

Query: 116 MFTNVSDLDLSINFHAKRENSLHEKIKALLRFRDKLDSLEREGSVTCVQSTVVAEVPIIK 175
              + SD+D+ +      +++  +K K +++  D L S     ++  VQ+   A VPI+K
Sbjct: 94  FGVSKSDIDVCLAI----QDADVDKSKIIMKLADILQS----DNLQNVQALTRARVPIVK 145

Query: 176 FTERVTGIECNLSVNNWDGXXXXXXXXXXXXXDERFRKLCFLMKSWAKAHYIYSSKDGIL 235
             + VTGI C++ +NN                D R R+L F++K WAK+  +  +  G L
Sbjct: 146 LMDPVTGISCDICINNLLAVVNTKLLRDYANIDPRLRQLAFIIKHWAKSRGVNETYHGTL 205

Query: 236 NFLSIILFVAFHLQTCNPPILP------PFSILLKDGADVMSVTKIVETYRNYGKQNKES 289
           +  + +L     LQ   P ILP      P   +  D  D     + VE   ++G+ NK++
Sbjct: 206 SSYAYVLMCVHFLQQQRPAILPCLQGMNPTYSVRVDNVDCAFFDQ-VEKLGHFGRHNKDT 264

Query: 290 LAKLFITLLVKLA-------SVESLWEQGICASVYEGSWILKYWNHHYSMRVEDFMDRSQ 342
           +A L        A       SV S+   G   S  +  W  +  N  + + +ED  + S 
Sbjct: 265 IAHLVWGFFFYWAYCHDYANSVISV-RTGSTISKRDKDWTRRIGNDRHLICIEDPFETSH 323

Query: 343 NVSRAVGTAKVETI 356
           ++ R V    ++ +
Sbjct: 324 DLGRVVDKRSIKVL 337