Miyakogusa Predicted Gene

Lj1g3v1363170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1363170.1 tr|B6SIZ7|B6SIZ7_MAIZE Trafficking protein
particle complex protein 2 OS=Zea mays PE=4
SV=1,60.98,3e-18,Sedlin_N,Sedlin; no description,NULL; MBP-1
INTERACTING PROTEIN-2A,NULL; MBP-1 INTERACTING PROTEIN-2,CUFF.27180.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102650.1 | trafficking protein particle complex subunit-l...   145   9e-36
Medtr3g097015.1 | trafficking protein particle complex protein |...   116   6e-27

>Medtr1g102650.1 | trafficking protein particle complex
          subunit-like protein | HC | chr1:46388106-46397706 |
          20130731
          Length = 168

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60
          MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60

Query: 61 VDRFNELVVSV 71
          VDRFNELVVSV
Sbjct: 61 VDRFNELVVSV 71


>Medtr3g097015.1 | trafficking protein particle complex protein |
          HC | chr3:44443782-44442988 | 20130731
          Length = 56

 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAM 56
          MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAM
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAM 56