Miyakogusa Predicted Gene

Lj1g3v1353700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1353700.1 tr|I1JXZ9|I1JXZ9_SOYBN DNA polymerase OS=Glycine
max PE=3 SV=1,91.62,0,DNA POLYMERASE DELTA CATALYTIC SUBUNIT,NULL; DNA
POLYMERASE CATALYTIC SUBUNIT,NULL; DNA/RNA polymera,CUFF.27148.1
         (358 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC | ...   670   0.0  
Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC | ...   670   0.0  
Medtr7g113380.1 | DNA polymerase family protein | HC | chr7:4669...   146   2e-35
Medtr7g113380.2 | DNA polymerase family protein | HC | chr7:4669...   146   3e-35
Medtr7g113380.3 | DNA polymerase family protein | HC | chr7:4669...   146   3e-35
Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 | 2...    77   2e-14

>Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC |
            chr3:44150897-44134651 | 20130731
          Length = 1086

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/358 (89%), Positives = 336/358 (93%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIEHTKKLVE+KFT LNGY + AEVIYGDTDSVMVQFGVS+V++AM LG+EAAE+ISGTF
Sbjct: 714  MIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSVMVQFGVSTVKDAMDLGKEAAEHISGTF 773

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
             +PIKLEFEKVY PYLLISKKRYAGLFWTK D  DKMD KGIETVRRDNCLLVKNLVNDC
Sbjct: 774  TKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDSHDKMDTKGIETVRRDNCLLVKNLVNDC 833

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            LHKILI+++IP AVQ+VKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVK AHVELAERM
Sbjct: 834  LHKILIEKNIPAAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERM 893

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VLENNIPIDP YYLENQISKPIL
Sbjct: 894  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPIL 953

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEPILKNAS ELLHGSHTRSISISTP+N GIMKFAKKQ TCIGCKALLS G  TLC H
Sbjct: 954  RIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIH 1013

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCKTVAQVSDLE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ
Sbjct: 1014 CKGREAELYCKTVAQVSDLEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 1071


>Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC |
            chr3:44150897-44133139 | 20130731
          Length = 1086

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/358 (89%), Positives = 336/358 (93%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIEHTKKLVE+KFT LNGY + AEVIYGDTDSVMVQFGVS+V++AM LG+EAAE+ISGTF
Sbjct: 714  MIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSVMVQFGVSTVKDAMDLGKEAAEHISGTF 773

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
             +PIKLEFEKVY PYLLISKKRYAGLFWTK D  DKMD KGIETVRRDNCLLVKNLVNDC
Sbjct: 774  TKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDSHDKMDTKGIETVRRDNCLLVKNLVNDC 833

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            LHKILI+++IP AVQ+VKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVK AHVELAERM
Sbjct: 834  LHKILIEKNIPAAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERM 893

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VLENNIPIDP YYLENQISKPIL
Sbjct: 894  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPIL 953

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEPILKNAS ELLHGSHTRSISISTP+N GIMKFAKKQ TCIGCKALLS G  TLC H
Sbjct: 954  RIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIH 1013

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCKTVAQVSDLE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ
Sbjct: 1014 CKGREAELYCKTVAQVSDLEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 1071


>Medtr7g113380.1 | DNA polymerase family protein | HC |
            chr7:46699532-46685378 | 20130731
          Length = 1924

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 20/352 (5%)

Query: 23   AEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKR 82
            A+VIYGDTDS+ V     + +EA ++G E A  I+     P+ L+ EKVY P  LI+KKR
Sbjct: 1553 AKVIYGDTDSMFVLLKGRTAKEAFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKR 1612

Query: 83   YAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            Y G  +  P++ + + DAKGIETVRRD C  V  ++   L      + +     Y++   
Sbjct: 1613 YVGYSYENPNQIEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQW 1672

Query: 142  SDLLMNRMDLSLLVITKGL---TKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 198
              +L  R+ L   +  K +   T +     +  A +   + MR  D    P   +R+PYV
Sbjct: 1673 KRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRV-DRRAEPRYAERIPYV 1731

Query: 199  IIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLENQISKPILRIFEPILKNASNELLH 256
            +I    GA+  +   DP+ VL  + P  I+  YY+  QI   + R+F   L  A      
Sbjct: 1732 VIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFG--LVGADLNQWF 1789

Query: 257  GSHTRSISISTPTNGGIMKFAKKQLT-------CIGCKALLSNGNHTLCSHCKGREPELY 309
                R +  ++  +     F + ++        C+ C  L+   +  LCS C   E    
Sbjct: 1790 AEMPRPVREASVKHAFTPNFQRTRIDYYYLSKHCVLCGGLV-QASARLCSQCSENEVAAA 1848

Query: 310  CKTVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYRRKKAQ 358
               + + + LE     L + CQ C G    L   V CTS  C +FY R+K Q
Sbjct: 1849 TAVIGKTAKLEQEMQHLVSICQHCGGGDRLLESGVKCTSISCLVFYERRKVQ 1900


>Medtr7g113380.2 | DNA polymerase family protein | HC |
            chr7:46695913-46684819 | 20130731
          Length = 1584

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 20/352 (5%)

Query: 23   AEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKR 82
            A+VIYGDTDS+ V     + +EA ++G E A  I+     P+ L+ EKVY P  LI+KKR
Sbjct: 1213 AKVIYGDTDSMFVLLKGRTAKEAFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKR 1272

Query: 83   YAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            Y G  +  P++ + + DAKGIETVRRD C  V  ++   L      + +     Y++   
Sbjct: 1273 YVGYSYENPNQIEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQW 1332

Query: 142  SDLLMNRMDLSLLVITKGL---TKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 198
              +L  R+ L   +  K +   T +     +  A +   + MR  D    P   +R+PYV
Sbjct: 1333 KRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRV-DRRAEPRYAERIPYV 1391

Query: 199  IIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLENQISKPILRIFEPILKNASNELLH 256
            +I    GA+  +   DP+ VL  + P  I+  YY+  QI   + R+F   L  A      
Sbjct: 1392 VIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFG--LVGADLNQWF 1449

Query: 257  GSHTRSISISTPTNGGIMKFAKKQLT-------CIGCKALLSNGNHTLCSHCKGREPELY 309
                R +  ++  +     F + ++        C+ C  L+   +  LCS C   E    
Sbjct: 1450 AEMPRPVREASVKHAFTPNFQRTRIDYYYLSKHCVLCGGLV-QASARLCSQCSENEVAAA 1508

Query: 310  CKTVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYRRKKAQ 358
               + + + LE     L + CQ C G    L   V CTS  C +FY R+K Q
Sbjct: 1509 TAVIGKTAKLEQEMQHLVSICQHCGGGDRLLESGVKCTSISCLVFYERRKVQ 1560


>Medtr7g113380.3 | DNA polymerase family protein | HC |
            chr7:46698259-46685022 | 20130731
          Length = 1815

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 20/352 (5%)

Query: 23   AEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKR 82
            A+VIYGDTDS+ V     + +EA ++G E A  I+     P+ L+ EKVY P  LI+KKR
Sbjct: 1444 AKVIYGDTDSMFVLLKGRTAKEAFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKR 1503

Query: 83   YAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            Y G  +  P++ + + DAKGIETVRRD C  V  ++   L      + +     Y++   
Sbjct: 1504 YVGYSYENPNQIEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQW 1563

Query: 142  SDLLMNRMDLSLLVITKGL---TKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 198
              +L  R+ L   +  K +   T +     +  A +   + MR  D    P   +R+PYV
Sbjct: 1564 KRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRV-DRRAEPRYAERIPYV 1622

Query: 199  IIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLENQISKPILRIFEPILKNASNELLH 256
            +I    GA+  +   DP+ VL  + P  I+  YY+  QI   + R+F   L  A      
Sbjct: 1623 VIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFG--LVGADLNQWF 1680

Query: 257  GSHTRSISISTPTNGGIMKFAKKQLT-------CIGCKALLSNGNHTLCSHCKGREPELY 309
                R +  ++  +     F + ++        C+ C  L+   +  LCS C   E    
Sbjct: 1681 AEMPRPVREASVKHAFTPNFQRTRIDYYYLSKHCVLCGGLV-QASARLCSQCSENEVAAA 1739

Query: 310  CKTVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYRRKKAQ 358
               + + + LE     L + CQ C G    L   V CTS  C +FY R+K Q
Sbjct: 1740 TAVIGKTAKLEQEMQHLVSICQHCGGGDRLLESGVKCTSISCLVFYERRKVQ 1791


>Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 |
            20130731
          Length = 1526

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 24/261 (9%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            +++ T  LV++   +        EVIYGDTDS+M+  G+  + +A  + ++  + ++  +
Sbjct: 1029 ILQSTVDLVQNNLNL--------EVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKY 1080

Query: 61   IQPIKLEFEKVY--FPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVN 118
             + ++++ + +Y     L   K     + +     ++ ++ KG++ VRRD  LL K+L +
Sbjct: 1081 -RCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGD 1139

Query: 119  DCLHKILIDRDIPGAVQYVKNAI----SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAA 172
             CL +IL        V+ + N++     ++   ++ L   VITK LTK  + Y       
Sbjct: 1140 FCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQP 1199

Query: 173  HVELAERMRKRDAATAPNVGDRVPYVII-------KAAKGAKNYEKSEDPIFVLENNIPI 225
            HV +A+R++++   +  +VGD +PYVI         +A G     +  D +   +    I
Sbjct: 1200 HVLVAQRLKQQGYTSGCSVGDTIPYVICCEQGGSSGSATGIALRARHPDELKQEQGTWLI 1259

Query: 226  DPHYYLENQISKPILRIFEPI 246
            D  YYL  QI   I R+   I
Sbjct: 1260 DIDYYLSQQIHPVISRLCASI 1280