Miyakogusa Predicted Gene

Lj1g3v1300590.3
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1300590.3 Non Characterized Hit- tr|F6H4A0|F6H4A0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.25,0.000000000000005,seg,NULL,CUFF.27087.3
         (171 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g094740.1 | ABC transporter-like protein | HC | chr3:43240...    88   5e-18
Medtr3g094740.3 | ABC transporter-like protein | HC | chr3:43240...    88   5e-18
Medtr8g091710.1 | ABC transporter-like protein | HC | chr8:38275...    87   6e-18
Medtr3g094740.2 | ABC transporter-like protein | HC | chr3:43240...    87   6e-18

>Medtr3g094740.1 | ABC transporter-like protein | HC |
           chr3:43240478-43224256 | 20130731
          Length = 744

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 2   ASSSLLLRPELKFLPPQITPKRRCFSLSGFCLCSVSRHNVSLR-MRIRPVKEEGAAVVDL 60
            +SSLL   +L FL PQIT + R FS S   +   S  NV+LR  RIR  KEE A    +
Sbjct: 3   TTSSLLQLSQLHFLSPQITLRNR-FSFSTRSISRFSTSNVTLRSTRIRASKEESA----I 57

Query: 61  AERASDVKWXXXXXXXXXXXXXXXXXFVRGYDLNGSLVKYXXXXXXXXXXXXXXXXEAS- 119
           AER +DV+W                 +V G  +NGS VKY                EAS 
Sbjct: 58  AERVNDVEWSGNGVASRAGSNGAAGGYVNGA-VNGSSVKYGNGNGVASTVVVDV--EASK 114

Query: 120 ---SKRKRRLEEIGKEDAWFKQRGEPQVEVA 147
                RKRRLEEIGKEDAWFKQ  E +VEVA
Sbjct: 115 VNEDGRKRRLEEIGKEDAWFKQTEEQKVEVA 145


>Medtr3g094740.3 | ABC transporter-like protein | HC |
           chr3:43240478-43224287 | 20130731
          Length = 744

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 2   ASSSLLLRPELKFLPPQITPKRRCFSLSGFCLCSVSRHNVSLR-MRIRPVKEEGAAVVDL 60
            +SSLL   +L FL PQIT + R FS S   +   S  NV+LR  RIR  KEE A    +
Sbjct: 3   TTSSLLQLSQLHFLSPQITLRNR-FSFSTRSISRFSTSNVTLRSTRIRASKEESA----I 57

Query: 61  AERASDVKWXXXXXXXXXXXXXXXXXFVRGYDLNGSLVKYXXXXXXXXXXXXXXXXEAS- 119
           AER +DV+W                 +V G  +NGS VKY                EAS 
Sbjct: 58  AERVNDVEWSGNGVASRAGSNGAAGGYVNGA-VNGSSVKYGNGNGVASTVVVDV--EASK 114

Query: 120 ---SKRKRRLEEIGKEDAWFKQRGEPQVEVA 147
                RKRRLEEIGKEDAWFKQ  E +VEVA
Sbjct: 115 VNEDGRKRRLEEIGKEDAWFKQTEEQKVEVA 145


>Medtr8g091710.1 | ABC transporter-like protein | HC |
           chr8:38275436-38265201 | 20130731
          Length = 735

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 79/154 (51%), Gaps = 25/154 (16%)

Query: 1   MASSSLLLRPELKFLPPQITPKRRCFSLSGFCLCSVSRHNVSLRMRIRPVKEEGAAVVDL 60
           MASSS LL  EL FL PQ TPKRR  S S FC+         L  +IR +KEEGA V   
Sbjct: 1   MASSSSLLLTELNFLAPQFTPKRRR-SNSRFCI---------LPTQIRALKEEGALV--- 47

Query: 61  AER-ASDVKWXXXXXXXXXXXXXXXXXFVRGY---DLNGSLVKYXXXXXXXXXXXXXXXX 116
            ER  SDVKW                  VRGY     NGSLVKY                
Sbjct: 48  EERIVSDVKWSGNGTVVNGSNGS-----VRGYVNGGGNGSLVKYVNGNGVAVEVVEDFVE 102

Query: 117 EASSK---RKRRLEEIGKEDAWFKQRGEPQVEVA 147
            +  K   RK+RLEEIGKEDAWFKQ GEPQVEVA
Sbjct: 103 TSKRKEVGRKKRLEEIGKEDAWFKQNGEPQVEVA 136


>Medtr3g094740.2 | ABC transporter-like protein | HC |
           chr3:43240323-43224504 | 20130731
          Length = 725

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 2   ASSSLLLRPELKFLPPQITPKRRCFSLSGFCLCSVSRHNVSLR-MRIRPVKEEGAAVVDL 60
            +SSLL   +L FL PQIT + R FS S   +   S  NV+LR  RIR  KEE A    +
Sbjct: 3   TTSSLLQLSQLHFLSPQITLRNR-FSFSTRSISRFSTSNVTLRSTRIRASKEESA----I 57

Query: 61  AERASDVKWXXXXXXXXXXXXXXXXXFVRGYDLNGSLVKYXXXXXXXXXXXXXXXXEAS- 119
           AER +DV+W                 +V G  +NGS VKY                EAS 
Sbjct: 58  AERVNDVEWSGNGVASRAGSNGAAGGYVNGA-VNGSSVKYGNGNGVASTVVVDV--EASK 114

Query: 120 ---SKRKRRLEEIGKEDAWFKQRGEPQVEVA 147
                RKRRLEEIGKEDAWFKQ  E +VEVA
Sbjct: 115 VNEDGRKRRLEEIGKEDAWFKQTEEQKVEVA 145