Miyakogusa Predicted Gene

Lj1g3v1290560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1290560.1 Non Characterized Hit- tr|I1JY52|I1JY52_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32055
PE,63,3e-17,seg,NULL; PsaN,Photosystem I PsaN, reaction centre subunit
N,NODE_37384_length_615_cov_19.052032.path1.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095540.1 | photosystem I reaction center subunit N | HC |...   219   7e-58

>Medtr3g095540.1 | photosystem I reaction center subunit N | HC |
           chr3:43654137-43652898 | 20130731
          Length = 172

 Score =  219 bits (559), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 125/173 (72%), Gaps = 15/173 (8%)

Query: 1   MAAMNSSVLACSYA-GCSDLNAKLTSMPSVALPPNVSSHKLPVIKAQ-----------AS 48
           MAAMNSSVLACSYA   S+LNAKL S+PS A  P VS  KLP+IKAQ           AS
Sbjct: 1   MAAMNSSVLACSYAISGSELNAKLISVPSAA-SPGVSGIKLPLIKAQQVRIPEAKESRAS 59

Query: 49  DGRR--XXXXXXXXXXXXXXXXXXXXXXXXIEQYLEKSKANKELNDKKRLATSGANFARA 106
           DGRR                          IE+YLEKSKANKELNDKKRLATSGANFARA
Sbjct: 60  DGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 119

Query: 107 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYNCGSNVFWKW 159
           YTVQFGTCKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKY CGSNVFWKW
Sbjct: 120 YTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172