Miyakogusa Predicted Gene

Lj1g3v1290380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1290380.1 tr|G7LD35|G7LD35_MEDTR Protein IDA-like protein
OS=Medicago truncatula GN=MTR_8g092860 PE=4
SV=1,80,1e-16,seg,NULL,NODE_65681_length_804_cov_27.624378.path1.1
         (76 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095690.1 | hypothetical protein | HC | chr3:43711596-4371...    90   5e-19
Medtr8g092860.1 | transmembrane protein, putative | HC | chr8:38...    89   7e-19
Medtr1g099210.1 | transmembrane protein, putative | LC | chr1:44...    54   3e-08

>Medtr3g095690.1 | hypothetical protein | HC |
          chr3:43711596-43710957 | 20130731
          Length = 76

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 50/57 (87%), Gaps = 1/57 (1%)

Query: 20 IFGHCHGSRNSNVFKLKHKSQHHGHFFGFLPKRMPIPYSTPSRKHNDIGLKSTWRSP 76
          IFGHC GSR +NVFK+K K +H GHFFGFLP+R+PIPYS+PSRKHNDIGL+S  RSP
Sbjct: 21 IFGHCDGSRATNVFKVKPKYEHKGHFFGFLPRRIPIPYSSPSRKHNDIGLQS-LRSP 76


>Medtr8g092860.1 | transmembrane protein, putative | HC |
          chr8:38932846-38932031 | 20130731
          Length = 76

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 48/55 (87%), Gaps = 1/55 (1%)

Query: 22 GHCHGSRNSNVFKLKHKSQHHGHFFGFLPKRMPIPYSTPSRKHNDIGLKSTWRSP 76
          G CHGSR +N FK+K KS+H GHFFGFLPKRM IPYSTPSRKHNDIGL+S WRSP
Sbjct: 23 GQCHGSRTTNDFKVKPKSEHQGHFFGFLPKRMHIPYSTPSRKHNDIGLRS-WRSP 76


>Medtr1g099210.1 | transmembrane protein, putative | LC |
          chr1:44763538-44763768 | 20130731
          Length = 76

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 22 GHCHGSRNSNVFKLKHKSQHH-GHFFGFLPKRMPIPYSTPSRKHNDIGLKSTWRSP 76
          GH +GSR++ VFK+  K++       G LPK MPIP S PS+KHNDIG++S+   P
Sbjct: 21 GHGYGSRHNQVFKVYPKTKDFPSSVLGLLPKTMPIPPSGPSKKHNDIGIQSSMGKP 76