Miyakogusa Predicted Gene

Lj1g3v1276990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1276990.1 tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I
polypeptide OS=Ostreococcus lucimarinus (strain
CC,43.48,3e-17,PsaN,Photosystem I PsaN, reaction centre subunit N;
seg,NULL,CUFF.27078.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095540.1 | photosystem I reaction center subunit N | HC |...   257   3e-69

>Medtr3g095540.1 | photosystem I reaction center subunit N | HC |
           chr3:43654137-43652898 | 20130731
          Length = 172

 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/175 (79%), Positives = 146/175 (83%), Gaps = 11/175 (6%)

Query: 1   MAAMNSSVLACGYAISGAGCSELNSKLTSMPSLT---VSGSKLPVIKARQARVPEPK--- 54
           MAAMNSSVLAC YAISG   SELN+KL S+PS     VSG KLP+IKA+Q R+PE K   
Sbjct: 1   MAAMNSSVLACSYAISG---SELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 57

Query: 55  ACDGRRXXXXXXXXXXFSTAVS--NSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 112
           A DGRR          F+TAVS  NSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA
Sbjct: 58  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 113 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 167
           RAYTVQFGTCKFPENFTGCQDLAKQKKVPFI+EDLELECEGKDKYKCGSNVFWKW
Sbjct: 118 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172