Miyakogusa Predicted Gene

Lj1g3v1265880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1265880.1 CUFF.27045.1
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095480.1 | transmembrane protein, putative | HC | chr3:43...   296   1e-80

>Medtr3g095480.1 | transmembrane protein, putative | HC |
           chr3:43629952-43629127 | 20130731
          Length = 192

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 159/194 (81%), Gaps = 7/194 (3%)

Query: 1   MADYDTHNHQQP-----TVSKETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKXXXXX 55
           MADY+ H+HQQ       VS+ETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHK     
Sbjct: 1   MADYENHHHQQQQQQQQVVSRETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKLFQIF 60

Query: 56  XXXXXXXXXXXSQSQRLQCRHCWIPITLLSLAHLIFYVSVAQTLRCINGFKYQRRCHKLT 115
                      S S RLQCRHCWIPITLLS+AHLIFYVSVAQTLRCINGFKYQRRCHKLT
Sbjct: 61  FIFLSLVFMANSMSPRLQCRHCWIPITLLSMAHLIFYVSVAQTLRCINGFKYQRRCHKLT 120

Query: 116 LGLATEKLREMRMRLSAAAAGDVHEYDDEEFEIHYQEPPESYFGKFKRNWALHFGFLILI 175
           LGLATEKLR+M+MRLS    GD     DEEFEIHYQEPPESYFGKFKRNWALHFGFLILI
Sbjct: 121 LGLATEKLRDMKMRLS--GGGDYDTIGDEEFEIHYQEPPESYFGKFKRNWALHFGFLILI 178

Query: 176 YGFMISSSVVLLCF 189
           YGFMISSSVVLLCF
Sbjct: 179 YGFMISSSVVLLCF 192