Miyakogusa Predicted Gene

Lj1g3v1243790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1243790.1 CUFF.27037.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g418505.1 | transmembrane protein, putative | HC | chr1:53...    69   1e-12
Medtr1g018470.1 | transmembrane protein, putative | HC | chr1:53...    69   1e-12

>Medtr1g418505.1 | transmembrane protein, putative | HC |
          chr1:5351440-5349002 | 20130731
          Length = 113

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 55/101 (54%), Gaps = 11/101 (10%)

Query: 1  MKVSGFC---VXXXXXXXXXXXXSPTLVSWFPDFVATTTSSGDKTTLIAVRRKLKENGNG 57
          MKVSGFC   +            S T   WFPDFVAT    GDK+T IAV RKLKEN + 
Sbjct: 1  MKVSGFCTLFLMVVAAFTFFSFKSTTAPPWFPDFVAT--RCGDKSTPIAVSRKLKENFHS 58

Query: 58 IRSNNKDDTGHMTLDDYHPIHPPPGSDPDEILRPRPVEHGS 98
          I+   K D G   LDDY PI P P S    +  P P+EHG+
Sbjct: 59 IK--RKLDVG---LDDYSPIDPSPDSGAKNV-NPGPIEHGT 93


>Medtr1g018470.1 | transmembrane protein, putative | HC |
          chr1:5333355-5331283 | 20130731
          Length = 113

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 55/101 (54%), Gaps = 11/101 (10%)

Query: 1  MKVSGFC---VXXXXXXXXXXXXSPTLVSWFPDFVATTTSSGDKTTLIAVRRKLKENGNG 57
          MKVSGFC   +            S T   WFPDFVAT    GDK+T IAV RKLKEN + 
Sbjct: 1  MKVSGFCTLFLMVVAAFTFFSFKSTTAPPWFPDFVAT--RCGDKSTPIAVSRKLKENFHS 58

Query: 58 IRSNNKDDTGHMTLDDYHPIHPPPGSDPDEILRPRPVEHGS 98
          I+   K D G   LDDY PI P P S    +  P P+EHG+
Sbjct: 59 IK--RKLDVG---LDDYSPIDPSPDSGAKNV-NPGPIEHGT 93