Miyakogusa Predicted Gene

Lj1g3v1219090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1219090.1 Non Characterized Hit- tr|G3TBZ3|G3TBZ3_LOXAF
Uncharacterized protein OS=Loxodonta africana
GN=PDCD2,27.27,2e-18,seg,NULL; PDCD2_C,Programmed cell death protein
2, C-terminal; PCDC2-RELATED,NULL; PCDC2 (PROGRAMMED,CUFF.26999.1
         (366 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095020.1 | programmed cell death-like protein | HC | chr3...   409   e-114

>Medtr3g095020.1 | programmed cell death-like protein | HC |
           chr3:43378466-43382191 | 20130731
          Length = 370

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/370 (61%), Positives = 262/370 (70%), Gaps = 7/370 (1%)

Query: 3   GAVLLGMPGPWADDYREPSDPYTTKIGGLPDWPIP---INGDLLRCGGCDCTLCLVAQVY 59
             VLLGMPGPWA+DYRE SDP+TTKIGG+PDWP+P   IN DLL C  C  +L LVAQVY
Sbjct: 2   AKVLLGMPGPWANDYRELSDPFTTKIGGIPDWPLPKDSINTDLLLCATCSGSLSLVAQVY 61

Query: 60  APLPSSQHRALFVLGCLSPKCGTRWRVFRVQKNGD-DVESFKHS-EVQLQNAELCEDVDE 117
           APL S  HR LF+ GC+SPKC T WRV R+QK  D D+   K   EVQ  N+   ED  E
Sbjct: 62  APL-SHHHRILFIFGCVSPKCTTVWRVLRLQKLADVDISQHKQQVEVQNSNSRDDEDESE 120

Query: 118 DEGEMDLAQLGKALFEAGTLAASNXXXXXXXXXXXXXXXXXXXXXXXXXXXLVCD-DNHI 176
           DE +M   +L +ALF+AGTLA+SN                              D +NH 
Sbjct: 121 DEDDMSFEELAEALFQAGTLASSNSKSKSKKQQKKRQHNFPTSSPYPEPTTASEDVNNHN 180

Query: 177 DMPVVPCFYMYTQEEPSTGDLSSICSNYASLSIKENKSDVEDHSEPEESWEKERYEYDKA 236
           D+PVVPCFY+YTQEEPSTG LSS+CS+Y+SLSIKEN + VED+ + EE+WEKE+YEYDKA
Sbjct: 181 DIPVVPCFYIYTQEEPSTGGLSSVCSSYSSLSIKENGNSVEDNMQAEETWEKEQYEYDKA 240

Query: 237 LTADRTYLKFKKRLDAYPEQCFRYAYGGKPILAAADEINPGSCTLCGRPRQFEMQLMPPL 296
           LTADRTYLKFKKRLDAYPEQCFRY++GGKPILA ADEINPGSC LCGRPRQFEMQLMPPL
Sbjct: 241 LTADRTYLKFKKRLDAYPEQCFRYSHGGKPILAVADEINPGSCGLCGRPRQFEMQLMPPL 300

Query: 297 LYFLQEAVDEDQRQMLENWDWMTLIVYXXXXXXXXXXXLAKSNSKGWIXXXXXXXXXXXX 356
           LYFLQEA+D++QRQM+ENWDWMTL+V              KSNS+GWI            
Sbjct: 301 LYFLQEALDDNQRQMVENWDWMTLLVLTCPESCCEEIKQVKSNSEGWIIAEEAVVAQCEE 360

Query: 357 SLPIQLGYFS 366
           S+P QLGYFS
Sbjct: 361 SMPTQLGYFS 370