Miyakogusa Predicted Gene

Lj1g3v1182090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1182090.1 tr|Q56VR0|Q56VR0_LOTJA Superoxide dismutase
OS=Lotus japonicus GN=sodA PE=3 SV=1,99.19,0,SOD_MN,Manganese/iron
superoxide dismutase, binding site; seg,NULL; SUPEROXIDE DISMUTASE
[MN],NULL; ,CUFF.27026.1
         (246 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g094250.1 | superoxide dismutase | HC | chr3:43080786-4307...   391   e-109
Medtr3g078860.1 | superoxide dismutase | HC | chr3:35607946-3560...   105   5e-23
Medtr1g048990.1 | superoxide dismutase | HC | chr1:18924069-1892...    94   9e-20
Medtr1g048990.2 | superoxide dismutase | HC | chr1:18924069-1892...    64   2e-10

>Medtr3g094250.1 | superoxide dismutase | HC |
           chr3:43080786-43075424 | 20130731
          Length = 235

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/241 (79%), Positives = 205/241 (85%), Gaps = 9/241 (3%)

Query: 1   MAVRTLLSRKTLASVLLRNDIXXXXXXXXXXXXXXQTHSRGIHALTLPDLGYDYGALEPV 60
           MAVRTLLS+KTL +VL RND                T SRG+H  TLPDL YDYGALEPV
Sbjct: 1   MAVRTLLSKKTLTTVL-RNDPKPIGAAI--------TQSRGLHVFTLPDLAYDYGALEPV 51

Query: 61  ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 120
           ISGEIMQIHHQKHHQTYITNYNKALEQL D++AK+DS   VKLQ+AIKFNGGGH+NHSIF
Sbjct: 52  ISGEIMQIHHQKHHQTYITNYNKALEQLHDSVAKADSLTTVKLQNAIKFNGGGHINHSIF 111

Query: 121 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 180
           WKNLAP REGGGE P  +LGWAIDT+FGS EALI+KVNAEGAALQGSGWVWL LDKE  +
Sbjct: 112 WKNLAPVREGGGEPPKEALGWAIDTNFGSLEALIQKVNAEGAALQGSGWVWLALDKELKR 171

Query: 181 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 240
           LVVETTANQDPLVTKG+SLVPL GIDVWEHAYYLQYKNVRPDYLKNIWKVINWKY SEVY
Sbjct: 172 LVVETTANQDPLVTKGTSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVY 231

Query: 241 E 241
           E
Sbjct: 232 E 232


>Medtr3g078860.1 | superoxide dismutase | HC |
           chr3:35607946-35603989 | 20130731
          Length = 262

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 12/179 (6%)

Query: 52  YDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKL-----QSA 106
           Y++ ALEP +S + + +H  +HH+ +I   NK L +  D +       +VK+       +
Sbjct: 56  YEHDALEPYMSKQTIDVHWGEHHRNFIEGLNKQLGK-DDILYGYTLDELVKVTYNNGNPS 114

Query: 107 IKFNGGGHV-NHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQ 165
            +FN    V NH  FW+++ P   GGG+ P   L   I+  FGSF    +K       L 
Sbjct: 115 PEFNNAAEVWNHDFFWESMQP---GGGDIPILGLLQQIEKDFGSFTNFKEKFTEAALTLF 171

Query: 166 GSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYL 224
           GSGWVWL L +E  +L +  T+N    +  G   +P+  +D+WEHAYYL YKN R  Y+
Sbjct: 172 GSGWVWLVLKREEKQLAIVKTSNSICPIVWGD--IPIINLDLWEHAYYLDYKNDRAKYV 228


>Medtr1g048990.1 | superoxide dismutase | HC |
           chr1:18924069-18927272 | 20130731
          Length = 311

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 106/216 (49%), Gaps = 34/216 (15%)

Query: 52  YDYGALEPVISGEIMQIHHQKHHQTYITNYNKALE-------QLQDAIAKSDSSAVVKLQ 104
           Y   ALEP++S    + H  KHH+ Y+ N NK +E        L++ I  S ++  +   
Sbjct: 64  YPLNALEPIMSQNTFEYHWGKHHRAYVDNLNKQIEGTDLDGKSLEETIIMSYNNGDI--- 120

Query: 105 SAIKFNGGGHV-NHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAA 163
               FN    V NH  FW+++     GGG  P G L   I+  FGSFE  +++     + 
Sbjct: 121 -LPAFNNAAQVWNHDFFWESMK---PGGGGKPSGELLKLIERDFGSFEKFVEQFKLAAST 176

Query: 164 LQGSGWVWLG-----LD----------KEFNKLVVETTANQ-DPLVTKGSSLVPLFGIDV 207
             GSGW WL      LD          +E  KLVV  + N  +PLV       PL  IDV
Sbjct: 177 QFGSGWAWLAYKENRLDVGNAVNPLATEEDKKLVVLKSPNAVNPLVWNHHH--PLLTIDV 234

Query: 208 WEHAYYLQYKNVRPDYLKNIW-KVINWKYVSEVYEK 242
           WEHAYYL Y+N RP+Y+     K+++W+ VS   EK
Sbjct: 235 WEHAYYLDYQNRRPEYISVFLDKLVSWEAVSSRLEK 270


>Medtr1g048990.2 | superoxide dismutase | HC |
           chr1:18924069-18927272 | 20130731
          Length = 238

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 80/182 (43%), Gaps = 33/182 (18%)

Query: 52  YDYGALEPVISGEIMQIHHQKHHQTYITNYNKALE-------QLQDAIAKSDSSAVVKLQ 104
           Y   ALEP++S    + H  KHH+ Y+ N NK +E        L++ I  S ++  +   
Sbjct: 64  YPLNALEPIMSQNTFEYHWGKHHRAYVDNLNKQIEGTDLDGKSLEETIIMSYNNGDI--- 120

Query: 105 SAIKFNGGGHV-NHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAA 163
               FN    V NH  FW+++ P   G        L   I+  FGSFE  +++     + 
Sbjct: 121 -LPAFNNAAQVWNHDFFWESMKPGGGGKPSGELLKL---IERDFGSFEKFVEQFKLAAST 176

Query: 164 LQGSGWVWLG-----LD----------KEFNKLVVETTANQ-DPLVTKGSSLVPLFGIDV 207
             GSGW WL      LD          +E  KLVV  + N  +PLV       PL  IDV
Sbjct: 177 QFGSGWAWLAYKENRLDVGNAVNPLATEEDKKLVVLKSPNAVNPLVWNHHH--PLLTIDV 234

Query: 208 WE 209
           WE
Sbjct: 235 WE 236