Miyakogusa Predicted Gene

Lj1g3v1181990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1181990.1 Non Characterized Hit- tr|J3N552|J3N552_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,47.89,0.000000000000006,SUBFAMILY NOT NAMED,NULL;
NONSENSE-MEDIATED MRNA DECAY PROTEIN 3,NULL; seg,NULL;
NMD3,NMD3,CUFF.26918.1
         (522 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064880.1 | nonsense-mediated mRNA decay NMD3 family prote...   683   0.0  
Medtr4g107030.1 | nonsense-mediated mRNA decay NMD3 family prote...   513   e-145
Medtr5g091890.1 | nonsense-mediated mRNA decay NMD3 family prote...   439   e-123
Medtr5g090460.1 | nonsense-mediated mRNA decay protein | LC | ch...   177   2e-44
Medtr5g089690.1 | nonsense-mediated mRNA decay protein | LC | ch...   169   4e-42
Medtr5g006990.1 | nonsense-mediated mRNA decay protein | LC | ch...   162   7e-40
Medtr5g091160.1 | nonsense-mediated mRNA decay protein | LC | ch...   162   1e-39
Medtr5g011470.1 | nonsense-mediated mRNA decay protein | LC | ch...   157   2e-38
Medtr5g011640.1 | nonsense-mediated mRNA decay protein | LC | ch...   156   4e-38
Medtr5g008620.1 | nonsense-mediated mRNA decay protein | LC | ch...   152   6e-37
Medtr5g090030.1 | nonsense-mediated mRNA decay protein | LC | ch...   149   5e-36
Medtr5g092540.1 | nonsense-mediated mRNA decay protein | LC | ch...   142   6e-34
Medtr5g091490.1 | nonsense-mediated mRNA decay protein | LC | ch...   133   5e-31
Medtr4g069000.1 | nonsense-mediated mRNA decay protein | LC | ch...    69   1e-11
Medtr8g442440.1 | nonsense-mediated mRNA decay protein, putative...    64   5e-10
Medtr0001s0160.1 | transmembrane protein, putative | LC | scaffo...    54   3e-07

>Medtr3g064880.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr3:29269880-29272912 | 20130731
          Length = 511

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/487 (68%), Positives = 391/487 (80%), Gaps = 10/487 (2%)

Query: 7   MEIEAGMFSVPQTICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKIYHCPEC 66
           M  EAGMF V QTI ++LCC CGI MQPNAANMCVKCL S+ DITEGL K++ + HCPEC
Sbjct: 1   MAQEAGMFKVHQTIGSVLCCKCGIRMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 60

Query: 67  ESYLQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSKRIKVNV 126
           ESYLQ  P+TW+K L+LES ELL FCL  L+K ++ NK ++V+A FIWTEPHSKR+KV V
Sbjct: 61  ESYLQP-PRTWVK-LQLESKELLTFCLKKLQKNMNINKAKLVNAEFIWTEPHSKRVKVKV 118

Query: 127 KVQKEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRRTFFYLE 186
            VQKEV +G ILEQSY VEYVQ +H+C+SC+R+AANPDQW+A VQLRQHVSHRRTF+YLE
Sbjct: 119 SVQKEVYHGAILEQSYPVEYVQQDHMCESCSRVAANPDQWIAAVQLRQHVSHRRTFYYLE 178

Query: 187 QLILKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIRSNGDNRQLVSHDTK 246
           QLIL+HG AA AIRIKQMD GIDFYFSN+SHG KFV+F+ KVAP++S  D +QLVSHD+K
Sbjct: 179 QLILRHGAAARAIRIKQMDHGIDFYFSNRSHGIKFVEFVGKVAPVKSRSD-KQLVSHDSK 237

Query: 247 SNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDPFTLRHC 306
           SN YNY+YT+SVEISPICREDLICLP   A  LGNIGP+VICTKVTNSI LLDP TL+  
Sbjct: 238 SNNYNYKYTFSVEISPICREDLICLPPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFG 297

Query: 307 SLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAVVEVARVSDFGK 366
            LDA QYW  SFKSLLTSRQL                   GGTKYALA  +VARVSDFGK
Sbjct: 298 FLDAEQYWRTSFKSLLTSRQL--VEYIVLDVEVVSSEVNVGGTKYALADAQVARVSDFGK 355

Query: 367 NDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYEEKRLKK 426
           NDT+FSI+THLGHLL PGD ALGYDLY AN N++ELD YKG++P  +L+KKSY EKR   
Sbjct: 356 NDTMFSIRTHLGHLLKPGDNALGYDLYAANSNDMELDRYKGNIPEVVLIKKSYPEKR--- 412

Query: 427 RGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNLSLYQNIEFQPSE 486
             K RS+KLK + ME DDK +++ DK ++EYE FL +LEENP+LRFN+SLYQN ++QPSE
Sbjct: 413 --KTRSFKLKRIPMEADDKIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSE 470

Query: 487 MASVTDG 493
           +ASVTDG
Sbjct: 471 VASVTDG 477


>Medtr4g107030.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr4:43995360-43996798 | 20130731
          Length = 436

 Score =  513 bits (1321), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/468 (58%), Positives = 319/468 (68%), Gaps = 60/468 (12%)

Query: 1   MLGSLGMEIEAGMFSVPQTICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKI 60
           M G  GM  EAGMF+V QTI N+LCC CGI MQPN  NMC+KCL S+ DITEGL K   I
Sbjct: 1   MSGLSGMAQEAGMFTVYQTIGNVLCCKCGISMQPNTTNMCLKCLCSEVDITEGLLKLHVI 60

Query: 61  YHCPECESYLQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSK 120
            HCPEC+SYLQ  P+TW+K L+LE+ ELL FCL  L+K ++ NKV++V+A FIWTEPHSK
Sbjct: 61  VHCPECQSYLQP-PRTWVK-LQLETKELLAFCLKRLQKNMNVNKVKLVNAEFIWTEPHSK 118

Query: 121 RIKVNVKVQKEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRR 180
           R+KV V VQKEV NG IL+QSYLVEYVQ +H+                     QHVSHRR
Sbjct: 119 RVKVKVSVQKEVYNGAILQQSYLVEYVQQDHM---------------------QHVSHRR 157

Query: 181 TFFYLEQLILKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIRSNGDNRQL 240
           TFFYLEQLILKHG AA A+RIKQMD GIDFYFS +SHGN F++FI KVAPIRS  D +QL
Sbjct: 158 TFFYLEQLILKHGAAARAVRIKQMDHGIDFYFSKRSHGNNFLEFIGKVAPIRSRND-KQL 216

Query: 241 VSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDP 300
           VSHD+KSN YNY+YT+SVEISPICREDLICLP    ++LGNIGP+VICTKVTNSI LLDP
Sbjct: 217 VSHDSKSNDYNYKYTFSVEISPICREDLICLPPKAYIALGNIGPIVICTKVTNSIALLDP 276

Query: 301 FTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXXX---XXXXXGGTKYALAVVE 357
            TL++  LDA+QYW ASFKSLLTS++L                      GGTKY LA  +
Sbjct: 277 LTLKYSFLDADQYWRASFKSLLTSKELVEYIVLDLEVVSSKIGPSEITMGGTKYVLADAQ 336

Query: 358 VARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKK 417
                                    PGD+ALGYDLY AN N+ E + YKG +P  IL+KK
Sbjct: 337 -------------------------PGDHALGYDLYRANSNDTEYENYKGHIPEVILIKK 371

Query: 418 SYEEKRLKKRGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLE 465
           SY+EKR    GKPRSW  KSL MEVDDK  +D    N E + FL D E
Sbjct: 372 SYKEKRC---GKPRSW--KSLPMEVDDKVGVD---YNLERDLFLKDPE 411


>Medtr5g091890.1 | nonsense-mediated mRNA decay NMD3 family protein
           | HC | chr5:40103554-40101723 | 20130731
          Length = 476

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/415 (54%), Positives = 285/415 (68%), Gaps = 8/415 (1%)

Query: 19  TICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKIYHCPECESYLQQQPKTWI 78
           T   I CC C  P++ N ANMCVKCL S+ +ITEGL K++++ HC ECE YLQ  P TWI
Sbjct: 14  TFHTIPCCQCASPLELNTANMCVKCLRSKTNITEGLLKKLRLTHCTECECYLQ--PPTWI 71

Query: 79  KYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSKRIKVNVKVQKEVLNGVIL 138
           K +  +S + L FCL  L++ +   +VR+V A  + +EP SK IK+ V VQKEV+NG IL
Sbjct: 72  KLIP-QSKQFLAFCLKKLEQNMKFKRVRLVHAETLPSEPDSKIIKIKVFVQKEVINGTIL 130

Query: 139 EQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRRTFFYLEQLILKHGVAATA 198
           EQSY+VEYVQ   +C+ CTR+ AN +QW AVVQLRQHVSH R+ F LEQ ILKHGV    
Sbjct: 131 EQSYVVEYVQYNRICEDCTRVNANANQWSAVVQLRQHVSHMRSIFDLEQAILKHGVGRNV 190

Query: 199 IRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIR-SNGDNRQLVSHDTKSNTYNYRYTYS 257
           +RIK+M +GIDF+F  +S   KFV F++   P++  NG  ++LVS D KSN YNY+YT+S
Sbjct: 191 VRIKKMKQGIDFFFDRESCAKKFVDFVKAQVPVKICNG--KELVSRDKKSNDYNYKYTFS 248

Query: 258 VEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGAS 317
           VEI P+CREDLI LP  VA SLGNIGP+V+CT+VTN+I L DP T   C L  + YW A 
Sbjct: 249 VEICPVCREDLIFLPPKVASSLGNIGPIVVCTRVTNTIALFDPITSGRCFLVGDVYWRAP 308

Query: 318 FKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAVVEVARVSDFGKNDTIFSIKTHL 377
           FKSLLTS++L                    G K+ LA VEVARV DFGKNDT F+IKTHL
Sbjct: 309 FKSLLTSKEL--VEYVVLDVEEVHSEVTVDGKKFGLANVEVARVKDFGKNDTRFNIKTHL 366

Query: 378 GHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYEEKRLKKRGKPRS 432
           G+LL  GD+A GYDL G N  + E+++ +     AIL+KK YEEKR KKRGK +S
Sbjct: 367 GYLLKFGDHAFGYDLCGVNSGDSEIELAEYIGGGAILIKKRYEEKRHKKRGKRQS 421


>Medtr5g090460.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39399230-39400261 | 20130731
          Length = 343

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 159/323 (49%), Gaps = 47/323 (14%)

Query: 167 VAVVQLRQ-HVSHRRTFFYLEQLILKHGVA--ATAIRIKQMDEGIDFYFSNKSHGNKFVQ 223
           V VV++ Q HV H RTFF +EQ+I+ +     +   RI++ D+G  FYF++  H +  V+
Sbjct: 16  VMVVKVSQEHVCHLRTFFDVEQIIVMNCFEPLSGVKRIERNDQGFTFYFNSLDHASCLVE 75

Query: 224 FIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIG 283
           +I+ + P        ++  H   S      Y + VEI PIC  DLI LP  VA S G   
Sbjct: 76  YIRDIVP-------SKIHCHQIPSEC---SYNFFVEIVPICCGDLIFLPPDVAASFG--A 123

Query: 284 PLVICTKVTNSIV-LLDPFTLRHCSLDANQYWGASFKSLLTSRQLXX----XXXXXXXXX 338
            +VICT+V   I  LLDPFTL   SL A+ YW A F       QL               
Sbjct: 124 NIVICTRVAKKITTLLDPFTLTAFSLKADHYWNAPFTHSFNRTQLVKYFVLNIVLQEDGE 183

Query: 339 XXXXXXXXGGTKYALAVVEVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCN 398
                      KY LA   VARV +FG NDT F I+THLGH+L  GDYALGYDL G   N
Sbjct: 184 EIAADSSTAAKKYRLADAVVARVENFGNNDTTFQIRTHLGHILKSGDYALGYDLSGGGAN 243

Query: 399 -NIELDIYKGDLPHAILVKKSYEEKRLKKRGKPRSWKLKSLNMEVDDKGRIDPDKMNSEY 457
            NI   I  G LP AIL+ K+                        DD   + PDK  S+Y
Sbjct: 244 TNI---INGGYLPAAILIAKT----------------------NCDDGSVVIPDKWQSDY 278

Query: 458 EQFLNDLEENPDLRFN-LSLYQN 479
           + FL DL + P L FN  ++Y+N
Sbjct: 279 QLFLEDLRQGPHLTFNAAAMYRN 301


>Medtr5g089690.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:38987001-38988478 | 20130731
          Length = 342

 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 164/342 (47%), Gaps = 69/342 (20%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQL--ILKHGVAATAIRI-KQMDEGIDFYFSNKSHGNKF 221
           W +VV++RQ HVS  RT F+LEQ+  +   G+     +I   +D+G  F F+  S    F
Sbjct: 5   WRSVVKVRQQHVSQLRTVFHLEQISVMTNLGILDDVEKIIYDVDQGFSFCFNIISCAWYF 64

Query: 222 VQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLG- 280
              I  + P++SN     ++   T+      RY +SVEI PIC  DLI LP +V  SLG 
Sbjct: 65  ATLIGDIVPVKSNW---AMIIPRTE------RYLFSVEIVPICCGDLIFLPPNVVASLGP 115

Query: 281 NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXX 340
           NIGP+VICT+V  +  LLDPFTL HC LDA+QYW A F       QL             
Sbjct: 116 NIGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQD 175

Query: 341 XXXXXXGGTKYA--------------------LAVVEVARVSDFGKNDTIFSIKTHLGHL 380
                    +                      LA   VARV D G NDT F I+THLG +
Sbjct: 176 NQQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRI 235

Query: 381 LNPGDYALGYDLYGA------NCNNIELDIYKGDLPHAILVKK-SYEEKRLKKRGKPRSW 433
           L PGD+ALGYDL G       N NN        +LP AIL+ K SY E      G+  + 
Sbjct: 236 LKPGDHALGYDLSGGEGGADTNTNN--------NLPAAILISKISYAE----VNGRVVAV 283

Query: 434 KLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNLS 475
           K                DK  S+Y+ F NDL+++P L F ++
Sbjct: 284 K----------------DKWESDYQLFFNDLQQDPQLLFKIT 309


>Medtr5g006990.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:1164722-1162932 | 20130731
          Length = 333

 Score =  162 bits (410), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 161/349 (46%), Gaps = 83/349 (23%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQL-ILKH-GVAATAIRIK-QMDEGIDFYFSNKSHGNKF 221
           W AVV +RQ HVS  RT F+LEQ+ +  H G+     RI+  ++EG+ FYF++ S   + 
Sbjct: 5   WRAVVNVRQQHVSELRTLFHLEQVSVWNHLGIVGNFRRIEYNINEGLSFYFNSLSDAAEV 64

Query: 222 VQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLG- 280
           V  I  + P +   +                 Y +SVEI PIC  DLI LP ++A SLG 
Sbjct: 65  VNLIVDILPAQVQWNKID-------------PYLFSVEIVPICCGDLIILPSNIAASLGP 111

Query: 281 NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXX- 339
           NIGP+VICT+V  +  LLDPFTL HC L A QYW A F    +  QL             
Sbjct: 112 NIGPIVICTRVAKTFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYAVLGIEKLDE 171

Query: 340 --------------------------XXXXXXXGGTKYALAVVEVARVSDFGKNDTIFSI 373
                                               KY LA   VARV D G N+  F I
Sbjct: 172 EEEEEVEENKQKKKLVFKDEHDEDGDAFATYTAAAKKYRLANAIVARVKDIGNNNHTFQI 231

Query: 374 KTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYEEKRLKKRGKPRSW 433
           +THLG +L PGD+ALGYDL             +GD    IL+ K                
Sbjct: 232 RTHLGRILKPGDHALGYDL------------PEGD---PILITK---------------- 260

Query: 434 KLKSLNMEVDDKGRIDP--DKMNSEYEQFLNDLEENPDLRFN-LSLYQN 479
               ++   ++ GR+ P  DK  S Y+ FL DL+++P L F+  ++Y+N
Sbjct: 261 ----ISFAKEENGRVVPVQDKWESGYQLFLKDLQQDPKLLFDQRAIYRN 305


>Medtr5g091160.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39725768-39726793 | 20130731
          Length = 341

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 163/341 (47%), Gaps = 59/341 (17%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQLILKHGVAATAIRIKQM----DEGIDFYFSNKSHGNK 220
           W +VV++RQ HVS  RT F+LEQ+ +   +A    R++++    D+G  F F+  S    
Sbjct: 5   WRSVVKVRQQHVSQLRTVFHLEQISVMTNLAIVD-RVERIIYDVDQGFSFCFNITSCAWH 63

Query: 221 FVQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLG 280
           F + I ++ P++S      ++   T+      RY +SVEI PIC  DLI LP +V  SLG
Sbjct: 64  FARLIGEIVPVKSAW---AMIIPRTE------RYLFSVEIVPICCGDLIFLPPNVVASLG 114

Query: 281 NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXX 340
               +VICT+V  +  LLDPFTL HC LDA+QYW A F       QL             
Sbjct: 115 --PNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLLQD 172

Query: 341 XXXXXXG--------------------GTKYALAVVEVARVSDFGKNDTIFSIKTHLGHL 380
                                        KY LA   VARV D G NDT F I+THLG +
Sbjct: 173 NQQDNQDEEEEVVEENKEKKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRI 232

Query: 381 LNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKK-SYEEKRLKKRGKPRSWKLKSLN 439
           L PGD+ALGYDL G             +LP AIL+ K SY                    
Sbjct: 233 LKPGDHALGYDLSGGVGEGGADTNTNNNLPAAILISKISYA------------------- 273

Query: 440 MEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNLSL-YQN 479
            EV+ +     DK  S+Y+ F NDL+++P L F ++  Y+N
Sbjct: 274 -EVNGRVVAVKDKWESDYQLFFNDLQQDPQLLFKITAPYRN 313


>Medtr5g011470.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:3298732-3300540 | 20130731
          Length = 351

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 160/356 (44%), Gaps = 79/356 (22%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQLILKHGVAATA--IRIKQM---DEGIDFYFSNKSHGN 219
           WV V+ +RQ HV   RT F+LEQ+ +   +   +  +RIK     DEG+ F F++ S   
Sbjct: 5   WVGVLNVRQQHVCQLRTLFHLEQISVWTNLTMLSHIMRIKNKIDDDEGLSFCFNSLSDAT 64

Query: 220 KFVQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSL 279
             V  I  + P +   +   +   +        R  +SVEI PIC  DLI LP H+A S 
Sbjct: 65  DVVNLIVDILPSKVRLNMNMIPPEE--------RCIFSVEIVPICCGDLIILPSHIAASF 116

Query: 280 G-NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXX 338
           G NIGP+VICT+V     LLDPFTL HC L A QYW A F    +  QL           
Sbjct: 117 GPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINLK 176

Query: 339 XXXXXXXXGGT------------------------------KYALAVVEVARVSDFGKND 368
                                                    KY LA   VARV D G N+
Sbjct: 177 EELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNNN 236

Query: 369 -TIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKK-SYEEKRLKK 426
            T F IKTHLG +L PGD+ALGYDL     +         +LP AIL+ K SY E     
Sbjct: 237 HTTFQIKTHLGRILKPGDHALGYDLSSGGVDT--------NLPAAILITKISYAE----- 283

Query: 427 RGKPRSWKLKSLNMEVDDKGRIDP--DKMNSEYEQFLNDLEENPDLRFN-LSLYQN 479
                           ++ GR+    DK  S+Y+ FL DL+++  L F+  ++Y+N
Sbjct: 284 ----------------EENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRN 323


>Medtr5g011640.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:3391728-3392783 | 20130731
          Length = 351

 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 159/356 (44%), Gaps = 79/356 (22%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQLILKHGVAATA--IRIKQM---DEGIDFYFSNKSHGN 219
           WV V+ +RQ HV   RT F+LEQ+ +       +  +RIK     DEG+ F F++ S   
Sbjct: 5   WVGVLNVRQQHVCQLRTLFHLEQISVWTNFTKLSHIMRIKNKIDDDEGLSFCFNSLSDAT 64

Query: 220 KFVQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSL 279
             V  I  + P +   +   +   +        R  +SVEI PIC  DLI LP H+A S 
Sbjct: 65  DVVNLIVDILPSKVRLNMNMIPPEE--------RCIFSVEIVPICCGDLIILPSHIAASF 116

Query: 280 G-NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXX 338
           G NIGP+VICT+V     LLDPFTL HC L A QYW A F    +  QL           
Sbjct: 117 GPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSRPQLVEYVVLGINLK 176

Query: 339 XXXXXXXXGGT------------------------------KYALAVVEVARVSDFGKND 368
                                                    KY LA   VARV D G N+
Sbjct: 177 EELEELVEENKEKKKLIIELYAADAVAAAAAVVAAEAAAAKKYRLADAMVARVKDIGNNN 236

Query: 369 -TIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKK-SYEEKRLKK 426
            T F IKTHLG +L PGD+ALGYDL     +         +LP AIL+ K SY E     
Sbjct: 237 HTTFQIKTHLGRILKPGDHALGYDLSSGGVDT--------NLPAAILITKISYAE----- 283

Query: 427 RGKPRSWKLKSLNMEVDDKGRIDP--DKMNSEYEQFLNDLEENPDLRFN-LSLYQN 479
                           ++ GR+    DK  S+Y+ FL DL+++  L F+  ++Y+N
Sbjct: 284 ----------------EENGRVVAVQDKWESDYQLFLKDLQQDTKLLFDRRAIYRN 323


>Medtr5g008620.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:1849296-1850424 | 20130731
          Length = 319

 Score =  152 bits (385), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 157/333 (47%), Gaps = 73/333 (21%)

Query: 166 WVAVVQLRQ-HVSHRRTFFYLEQLILKH--GVAATAIRIK-QMDEGIDFYFSNKSHGNKF 221
           + AVV +RQ HVS  RT F+LEQ+ + +  G+     RIK  +DEG+ F F++ S   K 
Sbjct: 5   FCAVVNVRQQHVSELRTLFHLEQVSVSNHLGILEKIRRIKYNIDEGLSFCFNSISDAAKV 64

Query: 222 VQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLG- 280
           V  I  + P         LV  +         Y +SVEI PIC  DLI LP ++A SLG 
Sbjct: 65  VNLITGILP--------ALVQWNKIDP-----YLFSVEIVPICCGDLIILPSNIAASLGP 111

Query: 281 NIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXX 340
           NIGP+VICT+V  +  LLDPFTL  C L A++YW A F    +  QL             
Sbjct: 112 NIGPIVICTRVARTFTLLDPFTLTRCFLKADRYWDAPFTPSFSRHQLVEYVVLGIEKLDE 171

Query: 341 XXXXXXGGT-----------------KYALAVVEVARVSDFGKND-TIFSIKTHLGHLLN 382
                                     KY LA   VARV D G N+ T F I+THL  +L 
Sbjct: 172 EEEEEEVEENKQKNKIFGYADAAAAKKYRLANAIVARVKDIGNNNHTTFQIRTHLSRILK 231

Query: 383 PGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYEEKRLKKRGKPRSWKLKSLNMEV 442
           PGD+ALGYDL             +GD    IL+ K                    ++   
Sbjct: 232 PGDHALGYDL------------PEGD---PILITK--------------------ISFAK 256

Query: 443 DDKGRIDP--DKMNSEYEQFLNDLEENPDLRFN 473
           ++ GR+ P  DK  S+Y+ FL DL+++P L F+
Sbjct: 257 EENGRVIPVQDKWESDYQLFLKDLQQDPKLLFD 289


>Medtr5g090030.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39168249-39169221 | 20130731
          Length = 279

 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 133/280 (47%), Gaps = 39/280 (13%)

Query: 216 SHGNKFVQFIQKVAPIRSNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHV 275
           +     V  I++  PI++  D          S     +Y + VEI PI   DLI LP ++
Sbjct: 18  ARAGHLVDCIRRTVPIKTRCD----------SIPSEIKYHFFVEIVPIFCGDLIFLPPNI 67

Query: 276 ALSLGNIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXX 335
           A +LG    +VICT+V   I LLDPFTL   SL A++YW A F    T  QL        
Sbjct: 68  AATLG--ANIVICTRVAKKITLLDPFTLTAFSLKADEYWNAPFTHSFTRTQLVKYVVLDI 125

Query: 336 XXXXXXXXXXXGGTKYALAVVEVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGA 395
                         KY LA   VARV DFG NDT F IKTHLGH+L  GDYALGYDL G 
Sbjct: 126 VLQEEEEIAAAAAKKYRLADAVVARVEDFGNNDTTFQIKTHLGHILKSGDYALGYDLSGR 185

Query: 396 NCNNIELDIYKGDLPHAILV-KKSYEEKRLKKRGKPRSWKLKSLNMEVDDKGRI---DPD 451
                      GDLP AIL+ K SY+E                      + GRI      
Sbjct: 186 KEGGGANTNINGDLPAAILITKSSYDE----------------------ENGRIVVVVEG 223

Query: 452 KMNSEYEQFLNDLEENPDLRFNL-SLYQNIEFQPSEMASV 490
           K  S+Y+ FL DL+++  L F + ++Y+N  + PS   ++
Sbjct: 224 KWESDYQLFLKDLQQDTRLTFRVAAMYRNQTYHPSSGEAI 263


>Medtr5g092540.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:40417873-40418652 | 20130731
          Length = 259

 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 122/243 (50%), Gaps = 46/243 (18%)

Query: 253 RYTYSVEISPICREDLICLPHHVALSLG-NIGPLVICTKVTNSIVLLDPFTLRHCSLDAN 311
           RY + VEI PIC  DLI LP +V  S G NIGP+VICT+V  +  LLDPFTL HC LDA+
Sbjct: 8   RYLFRVEIVPICCGDLIFLPPNVVASFGENIGPIVICTRVAKTFTLLDPFTLTHCFLDAH 67

Query: 312 QYWGASFKS----------------LLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAV 355
           QYW A F                  LL   Q                       KY LA 
Sbjct: 68  QYWKAPFTHSFNRTQLVEYVVLDTVLLQDNQDEEEEEDKEKKKNYDADAVAAAKKYCLAD 127

Query: 356 VEVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANC---NNIELDIYKGDLPHA 412
             VARV D G NDT F I+THLG +L PGD+ALGYDL G       NI +     +LP A
Sbjct: 128 AVVARVKDIGNNDTTFQIRTHLGRILKPGDHALGYDLSGGEGGADTNINI-----NLPAA 182

Query: 413 ILVKK-SYEEKRLKKRGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLR 471
           IL+ K SY E+         + ++ +L+           DK  S+Y+ F NDL+++  L 
Sbjct: 183 ILITKISYAEE---------NGRVVALH-----------DKWESDYQLFFNDLQQDTKLL 222

Query: 472 FNL 474
           FN+
Sbjct: 223 FNV 225


>Medtr5g091490.1 | nonsense-mediated mRNA decay protein | LC |
           chr5:39879150-39880189 | 20130731
          Length = 322

 Score =  133 bits (334), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 142/335 (42%), Gaps = 83/335 (24%)

Query: 168 AVVQLRQ-HVSHRRTFFYLEQLIL--KHGVAATAIRIK-QMDEGIDFYFSNKSHGNKFVQ 223
            VV +RQ HV   RTFF+LEQ+ +    G    A RIK  +DE                 
Sbjct: 9   VVVNVRQQHVCQLRTFFHLEQISVLNNFGTVRKAKRIKYDIDE----------------- 51

Query: 224 FIQKVAPIRSNGDNRQLVSHD-----TKSNTYNYRYTYSVEISPICREDLICLPHHVALS 278
                       +N   V  D      +S  Y +R    V+I PIC  DLI LP +V  S
Sbjct: 52  ------------ENTSCVKFDWDMILPESEIYLFR----VKIVPICCGDLIFLPPNVVAS 95

Query: 279 LGNIGPLVICTKVTNSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXX------ 332
           LG    +VICT+V  +  LLDPFTL HC LDA+QYW A F       QL           
Sbjct: 96  LG--PNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDIVLL 153

Query: 333 ------------XXXXXXXXXXXXXXGGTKYALAVVEVARVSDFGKNDTIFSIKTHLGHL 380
                                        KY LA   VARV D G NDT F I+THLG +
Sbjct: 154 QDNQDEEEEEEVVEENKKEKDAAAAAAAKKYRLADAVVARVKDTGNNDTTFQIRTHLGRI 213

Query: 381 LNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKK-SYEEKRLKKRGKPRSWKLKSLN 439
           L PGD+ALGYDL G             +LP AIL+ K SY                    
Sbjct: 214 LKPGDHALGYDLSGGVGEGGADTNTNNNLPAAILISKISYA------------------- 254

Query: 440 MEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNL 474
            EV+ +     DK  S+Y+ F NDL++N  L F++
Sbjct: 255 -EVNGRVVAVKDKWESDYQLFFNDLQQNTKLIFSV 288


>Medtr4g069000.1 | nonsense-mediated mRNA decay protein | LC |
           chr4:25913045-25912058 | 20130731
          Length = 212

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 26/130 (20%)

Query: 348 GTKYALAVVEVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKG 407
             KY LA   VARV D G NDT F I+THLG +L P D+ALGYDL               
Sbjct: 90  AKKYRLADDVVARVKDIGNNDTTFQIRTHLGRILKPDDHALGYDLSRGGEGGANT-NTNN 148

Query: 408 DLPHAILVKK-SYEEKRLKKRGKPRSWKLKSLNMEVDDKGRIDP--DKMNSEYEQFLNDL 464
           +L  AIL+ K SY E                      + GR+    DK  S+Y+ FLN L
Sbjct: 149 NLHAAILITKISYAE----------------------ENGRVVAVQDKWESDYQLFLNYL 186

Query: 465 EENPDLRFNL 474
           +++P L FN+
Sbjct: 187 QQDPKLIFNV 196


>Medtr8g442440.1 | nonsense-mediated mRNA decay protein, putative |
           HC | chr8:16044353-16044003 | 20130731
          Length = 89

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 252 YRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDPFTLRHCSLD 309
           + Y   + +SPI  EDLICLP + A  LGNIGP+V C+KV+NSI LLD   L+   +D
Sbjct: 12  FYYLEQLFLSPIRLEDLICLPPNAAAILGNIGPIVFCSKVSNSIALLDSLALKFGFMD 69


>Medtr0001s0160.1 | transmembrane protein, putative | LC |
           scaffold0001:55962-56354 | 20130731
          Length = 85

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 245 TKSNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVL 297
           +K  T+   +   + I+PIC EDLICLP + A  LGNIGP+V C+ V+N + L
Sbjct: 25  SKFITWQLMWLQWLMINPICLEDLICLPPNAAAILGNIGPIVFCSNVSNDMEL 77