Miyakogusa Predicted Gene

Lj1g3v1147570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1147570.1 tr|Q8LPR2|Q8LPR2_ARATH At3g19895 OS=Arabidopsis
thaliana PE=2 SV=1,41.67,0.0000000000002,RING/U-box,NULL; no
description,Zinc finger, RING/FYVE/PHD-type; seg,NULL,CUFF.26891.1
         (406 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g093960.1 | U-box protein | HC | chr3:42923644-42929741 | ...   503   e-142
Medtr3g093960.3 | U-box protein | HC | chr3:42923655-42929741 | ...   438   e-123
Medtr3g093960.2 | U-box protein | HC | chr3:42923655-42929741 | ...   430   e-120
Medtr3g093960.5 | U-box protein | HC | chr3:42923644-42929741 | ...   385   e-107
Medtr3g093960.4 | U-box protein | HC | chr3:42923644-42926829 | ...   246   3e-65
Medtr4g074220.1 | RING/U-box protein | HC | chr4:28252952-282417...   161   1e-39
Medtr4g074220.2 | RING/U-box protein | HC | chr4:28252952-282447...    76   7e-14

>Medtr3g093960.1 | U-box protein | HC | chr3:42923644-42929741 |
           20130731
          Length = 432

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/436 (64%), Positives = 310/436 (71%), Gaps = 41/436 (9%)

Query: 1   MSSDDITLVSGQRIENGLTSPLVFQDD---FN----PQR---NPAPKTRELGGGFIDDKI 50
           MSSDDI L   QRIENGLTSPLVF D    FN    P R   +P PKT    GGFIDDK+
Sbjct: 1   MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKT----GGFIDDKM 56

Query: 51  FTIDRDRDRFFTTPGAEFRRNVYADR---PDVRNWRGNGTPSSXXXXXXXXXXXXXXXXX 107
           FT++RD+  FF + G EFRRNV++DR    DV NW   GTPSS                 
Sbjct: 57  FTVNRDQ--FFPSQGTEFRRNVFSDRGNPSDVLNW-SEGTPSSNDSDGEDDEDDDEDDDG 113

Query: 108 XXAEVVRLKG-------NSNVINDDGVANG------KTQHHSPYVSGRDLL----XXXXX 150
               V RL G       +SN I D    NG      K+Q HS YVSGR+++         
Sbjct: 114 GDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQL 173

Query: 151 XXXXXXXXXXXXHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGC 210
                         +RERLGK+  SV    TDCEEYYS +L GTEGS SVQK MVDD+GC
Sbjct: 174 VHNNASGATMGGDDQRERLGKNHNSV----TDCEEYYSHYLQGTEGSPSVQKVMVDDDGC 229

Query: 211 GFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTC 270
           GFSGRKD ++S+ESGESLRAILSDPV+G LM+DAMILPCGHSFGGGGIQHV RMKACCTC
Sbjct: 230 GFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTC 289

Query: 271 SQPVSEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGV 330
           SQ   EESISPNLSL+AAVQAYRREEESQFYRSSKR+RER DQGGFG+  V+ESSR+RGV
Sbjct: 290 SQATLEESISPNLSLRAAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVESSRTRGV 349

Query: 331 QFPFAVMDRVVIKGNKRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVL 390
           QFPFAVMDRV+IKGNKRTP RFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKV 
Sbjct: 350 QFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVS 409

Query: 391 DDPSKPASSKMVPNWV 406
           D+PSKP SS M PNW+
Sbjct: 410 DNPSKPVSSNMGPNWL 425


>Medtr3g093960.3 | U-box protein | HC | chr3:42923655-42929741 |
           20130731
          Length = 403

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/400 (62%), Positives = 277/400 (69%), Gaps = 41/400 (10%)

Query: 1   MSSDDITLVSGQRIENGLTSPLVFQDD---FN----PQR---NPAPKTRELGGGFIDDKI 50
           MSSDDI L   QRIENGLTSPLVF D    FN    P R   +P PKT    GGFIDDK+
Sbjct: 1   MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKT----GGFIDDKM 56

Query: 51  FTIDRDRDRFFTTPGAEFRRNVYADR---PDVRNWRGNGTPSSXXXXXXXXXXXXXXXXX 107
           FT++RD+  FF + G EFRRNV++DR    DV NW   GTPSS                 
Sbjct: 57  FTVNRDQ--FFPSQGTEFRRNVFSDRGNPSDVLNW-SEGTPSSNDSDGEDDEDDDEDDDG 113

Query: 108 XXAEVVRLKG-------NSNVINDDGVANG------KTQHHSPYVSGRDLLXX----XXX 150
               V RL G       +SN I D    NG      K+Q HS YVSGR+++         
Sbjct: 114 GDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQL 173

Query: 151 XXXXXXXXXXXXHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGC 210
                         +RERLGK+  SV    TDCEEYYS +L GTEGS SVQK MVDD+GC
Sbjct: 174 VHNNASGATMGGDDQRERLGKNHNSV----TDCEEYYSHYLQGTEGSPSVQKVMVDDDGC 229

Query: 211 GFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTC 270
           GFSGRKD ++S+ESGESLRAILSDPV+G LM+DAMILPCGHSFGGGGIQHV RMKACCTC
Sbjct: 230 GFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTC 289

Query: 271 SQPVSEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGV 330
           SQ   EESISPNLSL+AAVQAYRREEESQFYRSSKR+RER DQGGFG+  V+ESSR+RGV
Sbjct: 290 SQATLEESISPNLSLRAAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVESSRTRGV 349

Query: 331 QFPFAVMDRVVIKGNKRTPPRFVGREAIVTTQCLNGWYVV 370
           QFPFAVMDRV+IKGNKRTP RFVGREAIVTTQCLNGW+V 
Sbjct: 350 QFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWFVT 389


>Medtr3g093960.2 | U-box protein | HC | chr3:42923655-42929741 |
           20130731
          Length = 385

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/396 (62%), Positives = 274/396 (69%), Gaps = 41/396 (10%)

Query: 1   MSSDDITLVSGQRIENGLTSPLVFQDD---FN----PQR---NPAPKTRELGGGFIDDKI 50
           MSSDDI L   QRIENGLTSPLVF D    FN    P R   +P PKT    GGFIDDK+
Sbjct: 1   MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKT----GGFIDDKM 56

Query: 51  FTIDRDRDRFFTTPGAEFRRNVYADR---PDVRNWRGNGTPSSXXXXXXXXXXXXXXXXX 107
           FT++RD+  FF + G EFRRNV++DR    DV NW   GTPSS                 
Sbjct: 57  FTVNRDQ--FFPSQGTEFRRNVFSDRGNPSDVLNW-SEGTPSSNDSDGEDDEDDDEDDDG 113

Query: 108 XXAEVVRLKG-------NSNVINDDGVANG------KTQHHSPYVSGRDLLXX----XXX 150
               V RL G       +SN I D    NG      K+Q HS YVSGR+++         
Sbjct: 114 GDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQL 173

Query: 151 XXXXXXXXXXXXHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGC 210
                         +RERLGK+  SV    TDCEEYYS +L GTEGS SVQK MVDD+GC
Sbjct: 174 VHNNASGATMGGDDQRERLGKNHNSV----TDCEEYYSHYLQGTEGSPSVQKVMVDDDGC 229

Query: 211 GFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTC 270
           GFSGRKD ++S+ESGESLRAILSDPV+G LM+DAMILPCGHSFGGGGIQHV RMKACCTC
Sbjct: 230 GFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTC 289

Query: 271 SQPVSEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGV 330
           SQ   EESISPNLSL+AAVQAYRREEESQFYRSSKR+RER DQGGFG+  V+ESSR+RGV
Sbjct: 290 SQATLEESISPNLSLRAAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVESSRTRGV 349

Query: 331 QFPFAVMDRVVIKGNKRTPPRFVGREAIVTTQCLNG 366
           QFPFAVMDRV+IKGNKRTP RFVGREAIVTTQCLNG
Sbjct: 350 QFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNG 385


>Medtr3g093960.5 | U-box protein | HC | chr3:42923644-42929741 |
           20130731
          Length = 384

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/373 (60%), Positives = 252/373 (67%), Gaps = 41/373 (10%)

Query: 1   MSSDDITLVSGQRIENGLTSPLVFQDD---FN----PQR---NPAPKTRELGGGFIDDKI 50
           MSSDDI L   QRIENGLTSPLVF D    FN    P R   +P PKT    GGFIDDK+
Sbjct: 1   MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKT----GGFIDDKM 56

Query: 51  FTIDRDRDRFFTTPGAEFRRNVYADR---PDVRNWRGNGTPSSXXXXXXXXXXXXXXXXX 107
           FT++RD+  FF + G EFRRNV++DR    DV NW   GTPSS                 
Sbjct: 57  FTVNRDQ--FFPSQGTEFRRNVFSDRGNPSDVLNW-SEGTPSSNDSDGEDDEDDDEDDDG 113

Query: 108 XXAEVVRLKG-------NSNVINDDGVANG------KTQHHSPYVSGRDLL----XXXXX 150
               V RL G       +SN I D    NG      K+Q HS YVSGR+++         
Sbjct: 114 GDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQL 173

Query: 151 XXXXXXXXXXXXHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGC 210
                         +RERLGK+  SV    TDCEEYYS +L GTEGS SVQK MVDD+GC
Sbjct: 174 VHNNASGATMGGDDQRERLGKNHNSV----TDCEEYYSHYLQGTEGSPSVQKVMVDDDGC 229

Query: 211 GFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTC 270
           GFSGRKD ++S+ESGESLRAILSDPV+G LM+DAMILPCGHSFGGGGIQHV RMKACCTC
Sbjct: 230 GFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTC 289

Query: 271 SQPVSEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGV 330
           SQ   EESISPNLSL+AAVQAYRREEESQFYRSSKR+RER DQGGFG+  V+ESSR+RGV
Sbjct: 290 SQATLEESISPNLSLRAAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVESSRTRGV 349

Query: 331 QFPFAVMDRVVIK 343
           QFPFAVMDRV+IK
Sbjct: 350 QFPFAVMDRVIIK 362


>Medtr3g093960.4 | U-box protein | HC | chr3:42923644-42926829 |
           20130731
          Length = 307

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/294 (53%), Positives = 179/294 (60%), Gaps = 41/294 (13%)

Query: 1   MSSDDITLVSGQRIENGLTSPLVFQDD---FN----PQR---NPAPKTRELGGGFIDDKI 50
           MSSDDI L   QRIENGLTSPLVF D    FN    P R   +P PKT    GGFIDDK+
Sbjct: 1   MSSDDINLTPDQRIENGLTSPLVFPDHSLRFNCGGAPPRQVGDPVPKT----GGFIDDKM 56

Query: 51  FTIDRDRDRFFTTPGAEFRRNVYADR---PDVRNWRGNGTPSSXXXXXXXXXXXXXXXXX 107
           FT++RD+  FF + G EFRRNV++DR    DV NW   GTPSS                 
Sbjct: 57  FTVNRDQ--FFPSQGTEFRRNVFSDRGNPSDVLNWS-EGTPSSNDSDGEDDEDDDEDDDG 113

Query: 108 XXAEVVRLKG-------NSNVINDDGVANG------KTQHHSPYVSGRDLLXXX----XX 150
               V RL G       +SN I D    NG      K+Q HS YVSGR+++         
Sbjct: 114 GDTVVDRLVGVGDGSKRSSNSIIDVNNNNGGNVTNRKSQLHSAYVSGREIMGKDGEIVQL 173

Query: 151 XXXXXXXXXXXXHRRRERLGKSQGSVSVAETDCEEYYSQFLHGTEGSASVQKAMVDDNGC 210
                         +RERLGK+  SV    TDCEEYYS +L GTEGS SVQK MVDD+GC
Sbjct: 174 VHNNASGATMGGDDQRERLGKNHNSV----TDCEEYYSHYLQGTEGSPSVQKVMVDDDGC 229

Query: 211 GFSGRKDVMFSTESGESLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRM 264
           GFSGRKD ++S+ESGESLRAILSDPV+G LM+DAMILPCGHSFGGGGIQHV RM
Sbjct: 230 GFSGRKDFVYSSESGESLRAILSDPVSGTLMDDAMILPCGHSFGGGGIQHVIRM 283


>Medtr4g074220.1 | RING/U-box protein | HC | chr4:28252952-28241793
           | 20130731
          Length = 594

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 126/188 (67%), Gaps = 12/188 (6%)

Query: 227 SLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESISPNLSLQ 286
           SLR++LSDP++G+ +EDAM++ CGHSFGG  ++ V     C  C+  +   S+ PN +L+
Sbjct: 402 SLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIDPSSLIPNHALR 461

Query: 287 AAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSR-----------SRGVQFPFA 335
           AA  A + E++ + +R++  R+ R + G   D P+   +R            RGVQ+PF+
Sbjct: 462 AAAAAVKHEDDRRLFRNAALRKRRKEMGEPMD-PIRRVNRENGDFTSPDGLQRGVQYPFS 520

Query: 336 VMDRVVIKGNKRTPPRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSK 395
           V ++V+IKGN+RTP +FVG+EA++T+QCLNGWY++K + + E+V+LQYRSL K+L+ P+ 
Sbjct: 521 VNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNSPTM 580

Query: 396 PASSKMVP 403
               ++ P
Sbjct: 581 EDQVQLQP 588


>Medtr4g074220.2 | RING/U-box protein | HC | chr4:28252952-28244715
           | 20130731
          Length = 511

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 1/108 (0%)

Query: 227 SLRAILSDPVTGALMEDAMILPCGHSFGGGGIQHVTRMKACCTCSQPVSEESISPNLSLQ 286
           SLR++LSDP++G+ +EDAM++ CGHSFGG  ++ V     C  C+  +   S+ PN +L+
Sbjct: 402 SLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIDPSSLIPNHALR 461

Query: 287 AAVQAYRREEESQFYRSSKRRRERLDQGGFGDSPVMESSRSRGVQFPF 334
           AA  A + E++ + +R++  R+ R + G   D P+   +R   ++F F
Sbjct: 462 AAAAAVKHEDDRRLFRNAALRKRRKEMGEPMD-PIRRVNRITSLRFLF 508