Miyakogusa Predicted Gene

Lj1g3v1134040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1134040.1 Non Characterized Hit- tr|D8QRJ9|D8QRJ9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.56,0.0000000001,no description,Transcription factor IIS,
N-terminal; no description,Transcription elongation factor
,CUFF.27141.1
         (369 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g093800.1 | transcription elongation factor S-II, putative...   496   e-140
Medtr3g108010.1 | SPOC domain/transcription elongation factor S-...    62   1e-09

>Medtr3g093800.1 | transcription elongation factor S-II, putative |
           HC | chr3:42860884-42857714 | 20130731
          Length = 369

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/366 (67%), Positives = 273/366 (74%), Gaps = 6/366 (1%)

Query: 5   LVELYEXXXXXXXXXXXXXXE-HEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKH 63
           LVELYE                 EETRC+DALEQLK FPVNYKILVNTQVGKHLK LTKH
Sbjct: 9   LVELYEAAKKAADASTSTDNSPSEETRCLDALEQLKNFPVNYKILVNTQVGKHLKTLTKH 68

Query: 64  PKPKIKAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSXXXXXX 123
           P+  I+AFAV+LI IWK +IIKETSKNKNG SD+KVES NG+RAKAGK+QKSPS      
Sbjct: 69  PRENIRAFAVDLIAIWKDVIIKETSKNKNGASDSKVESTNGERAKAGKLQKSPSVKVEKG 128

Query: 124 XXXXXXXIDRNGTPRSSSENTNKARNVDVKIEKTERAASVKVEKIXXXXXXXXXXXXXXX 183
                  ++ NG+ + SS N  KA+NVDVKIEKT+R +++K ++                
Sbjct: 129 ESAKVEKVNGNGSSKLSSGNV-KAQNVDVKIEKTDRTSNIKAKE----EKPVSAAKKISS 183

Query: 184 XXXXPPKLTSMIKSNDSARDKIRELLREALSKVSEEADGDMMDEVNACDPIRVAVKVESV 243
               PPKL +MIKSNDSARDKIRELLR+AL+KV EEAD DMMDEVNACDPIRVAV VESV
Sbjct: 184 SAAAPPKLKTMIKSNDSARDKIRELLRDALAKVFEEADEDMMDEVNACDPIRVAVTVESV 243

Query: 244 LFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMASXXXXX 303
           LFENWG SNGAQKVKYRSLMFNLKD KNPDFRRKVLLG +EP+RL  MS+AEMAS     
Sbjct: 244 LFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMSSAEMASEQRKQ 303

Query: 304 XXXXXXXXALFECERGAPPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCN 363
                   ALF+CERG  PKATTDQFKCGRCGQRK TYYQMQTRSADEPMTTYVTC  CN
Sbjct: 304 ENEKIEQKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCN 363

Query: 364 NRWKFC 369
           NRWKFC
Sbjct: 364 NRWKFC 369


>Medtr3g108010.1 | SPOC domain/transcription elongation factor S-II,
           putative | HC | chr3:49909087-49915326 | 20130731
          Length = 1132

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 233 PIRVAVKVESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMS 292
           P  +A ++E+ LF+ +G  N   K K RSL+FNLKD  NP+ R +V+ G I PE+L +M+
Sbjct: 393 PELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKILPEQLCSMT 452

Query: 293 TAEMAS 298
             E+AS
Sbjct: 453 AEELAS 458