Miyakogusa Predicted Gene

Lj1g3v1102750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1102750.1 Non Characterized Hit- tr|J3LHQ2|J3LHQ2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G4,71.88,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.26848.1
         (315 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g093520.1 | transducin/WD40 repeat protein | HC | chr3:427...   587   e-168
Medtr5g068570.1 | transducin/WD40 repeat protein | HC | chr5:290...   547   e-156
Medtr5g068570.2 | transducin/WD40 repeat protein | HC | chr5:290...   547   e-156
Medtr7g074450.1 | transducin/WD40 repeat protein | HC | chr7:278...   442   e-124
Medtr4g102610.1 | transducin/WD40 repeat protein | LC | chr4:425...   291   8e-79
Medtr4g102580.1 | transducin/WD40 repeat protein | LC | chr4:425...   120   1e-27
Medtr6g460700.1 | hypothetical protein | LC | chr6:20972946-2097...    70   3e-12

>Medtr3g093520.1 | transducin/WD40 repeat protein | HC |
           chr3:42734718-42725141 | 20130731
          Length = 484

 Score =  587 bits (1514), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/311 (94%), Positives = 298/311 (95%), Gaps = 3/311 (0%)

Query: 4   GGGRRITVSPRPCCGRRVV--AKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDA 61
           G GRRITVSPRPCCGRRV   AKK  R G  VDGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3   GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62

Query: 62  QERFRNIRLQEEYDTHDPKGPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSR 121
           QERFRNIRLQEEYDTHDPKGPSS VVLPFLR+RSKIIEIVAAQDIVFALAQSGVCAAFSR
Sbjct: 63  QERFRNIRLQEEYDTHDPKGPSS-VVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSR 121

Query: 122 ESNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDA 181
           E+NQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDA
Sbjct: 122 ETNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDA 181

Query: 182 GFALFESESLKWPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 241
           GFALFESESLKWPGFVEFDDVNGKVLT+SAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS
Sbjct: 182 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 241

Query: 242 PGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENL 301
           PGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENL
Sbjct: 242 PGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENL 301

Query: 302 QILDVSNFLLS 312
           QILDV  F L+
Sbjct: 302 QILDVRTFELT 312


>Medtr5g068570.1 | transducin/WD40 repeat protein | HC |
           chr5:29030009-29035187 | 20130731
          Length = 488

 Score =  547 bits (1410), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/302 (87%), Positives = 287/302 (95%), Gaps = 1/302 (0%)

Query: 13  PRPCCGRRVVAKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQE 72
           PRPCCGRRVVAKK   RGGA DGF+NSV+KLQRREIS+K  R F++TDAQERFRNIRLQE
Sbjct: 17  PRPCCGRRVVAKKKQGRGGAGDGFINSVRKLQRREISTKSVRGFSITDAQERFRNIRLQE 76

Query: 73  EYDTHDPKGPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNV 132
           EYDT+DPKGPSS +VLPFLR+RSKIIEIVAAQDIVFALAQSGVCAAF+RE+N+RICFLN+
Sbjct: 77  EYDTYDPKGPSS-IVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFNRETNERICFLNI 135

Query: 133 SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLK 192
           SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRR +PDAGFALFESESLK
Sbjct: 136 SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRVQPDAGFALFESESLK 195

Query: 193 WPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKA 252
           WPGFVEFDDVNGKVLT+SAQDSIYKVFDLKNY+MLYS++DKNVQEIKISPGIMLLI+ KA
Sbjct: 196 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYSMLYSVADKNVQEIKISPGIMLLIYTKA 255

Query: 253 SSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVSNFLLS 312
           SSHVPLKILSIEDGTVLKSFNHL++RN KVDFIEQFNEKLLVKQENENLQILDV  F L+
Sbjct: 256 SSHVPLKILSIEDGTVLKSFNHLIHRNSKVDFIEQFNEKLLVKQENENLQILDVRTFELT 315

Query: 313 WI 314
            +
Sbjct: 316 EV 317


>Medtr5g068570.2 | transducin/WD40 repeat protein | HC |
           chr5:29029960-29035186 | 20130731
          Length = 488

 Score =  547 bits (1410), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/302 (87%), Positives = 287/302 (95%), Gaps = 1/302 (0%)

Query: 13  PRPCCGRRVVAKKGPRRGGAVDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQE 72
           PRPCCGRRVVAKK   RGGA DGF+NSV+KLQRREIS+K  R F++TDAQERFRNIRLQE
Sbjct: 17  PRPCCGRRVVAKKKQGRGGAGDGFINSVRKLQRREISTKSVRGFSITDAQERFRNIRLQE 76

Query: 73  EYDTHDPKGPSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNV 132
           EYDT+DPKGPSS +VLPFLR+RSKIIEIVAAQDIVFALAQSGVCAAF+RE+N+RICFLN+
Sbjct: 77  EYDTYDPKGPSS-IVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFNRETNERICFLNI 135

Query: 133 SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLK 192
           SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRR +PDAGFALFESESLK
Sbjct: 136 SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRVQPDAGFALFESESLK 195

Query: 193 WPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKA 252
           WPGFVEFDDVNGKVLT+SAQDSIYKVFDLKNY+MLYS++DKNVQEIKISPGIMLLI+ KA
Sbjct: 196 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYSMLYSVADKNVQEIKISPGIMLLIYTKA 255

Query: 253 SSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVSNFLLS 312
           SSHVPLKILSIEDGTVLKSFNHL++RN KVDFIEQFNEKLLVKQENENLQILDV  F L+
Sbjct: 256 SSHVPLKILSIEDGTVLKSFNHLIHRNSKVDFIEQFNEKLLVKQENENLQILDVRTFELT 315

Query: 313 WI 314
            +
Sbjct: 316 EV 317


>Medtr7g074450.1 | transducin/WD40 repeat protein | HC |
           chr7:27820007-27826979 | 20130731
          Length = 477

 Score =  442 bits (1138), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/294 (74%), Positives = 251/294 (85%), Gaps = 6/294 (2%)

Query: 19  RRVVAKKGPRRGGA-----VDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEE 73
           RR+VA KG                N +KKLQ REIS K  R+F    +  RF+N+RL  +
Sbjct: 14  RRIVATKGESSNNGSKPNIKINNKNIIKKLQTREISPKPHRSFVAATSPHRFQNMRLTHQ 73

Query: 74  YDTHDPKGPSS-AVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNV 132
           +DTHDPK  SS +  LPFL +R+K++EIVAA++IVFALA SG+CAAFSRE+N+RICFLN+
Sbjct: 74  FDTHDPKHHSSPSPFLPFLMKRTKVVEIVAAKNIVFALAHSGLCAAFSRETNERICFLNI 133

Query: 133 SPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLK 192
            PDEVIRSLFYNKNNDSLITVSVYAS+++SSLKCRSTRIEYI+R KPDAGF LF+SESLK
Sbjct: 134 CPDEVIRSLFYNKNNDSLITVSVYASENFSSLKCRSTRIEYIKRAKPDAGFPLFQSESLK 193

Query: 193 WPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKA 252
           WPGFVEFDDVN KVLT+SAQDSIYKVFDLKNYT+LYSISD+NVQEIKISPGIMLLIF +A
Sbjct: 194 WPGFVEFDDVNAKVLTYSAQDSIYKVFDLKNYTLLYSISDRNVQEIKISPGIMLLIFNRA 253

Query: 253 SSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDV 306
           S H+PLKI+SIEDGTVLK+FNHLL+RNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 254 SGHIPLKIISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307


>Medtr4g102610.1 | transducin/WD40 repeat protein | LC |
           chr4:42534737-42536101 | 20130731
          Length = 444

 Score =  291 bits (744), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 159/288 (55%), Positives = 196/288 (68%), Gaps = 20/288 (6%)

Query: 23  AKKGPRRGGAVDG-FVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPKG 81
            K+G   GG +     N +K LQ RE+S K  RAF       RF+N+R   E DTH  K 
Sbjct: 8   GKEGSNNGGNIKKRNKNIIKNLQDRELSCKHHRAFVTATTPHRFQNMRFSHELDTHHSKH 67

Query: 82  PSSAVVLPFLRRRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNVSPDEVIRSL 141
            S   +LPFL  R+KI++I AA++IVF LA+SG+CAAFS E+++RICF+N+ P+++IR L
Sbjct: 68  KSPPHILPFLMGRTKIVQITAAKNIVFVLAESGLCAAFSSETDERICFMNLHPNDLIRRL 127

Query: 142 FYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD 201
           FYNKNNDSLIT S   S S    + RSTRIE IRR KPDAGF LF+SES      V+FDD
Sbjct: 128 FYNKNNDSLITAS---SRSRMPEEYRSTRIEDIRRAKPDAGFDLFQSESF----VVKFDD 180

Query: 202 VNGKVLTFSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKASSHVPLKIL 261
           VN KVLT+SAQDSI+KVFDLKNYT LY  S  NV  I IS GIML IF + S H+P+KI+
Sbjct: 181 VNAKVLTYSAQDSIFKVFDLKNYTFLYLFSFSNVDWINISSGIMLFIFKRTSDHIPVKII 240

Query: 262 SIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVSNF 309
           SIEDG           +N++VD I   NEKLLV Q+N NLQILD+ +F
Sbjct: 241 SIEDG-----------KNREVDMI-VCNEKLLVMQDNVNLQILDLPSF 276


>Medtr4g102580.1 | transducin/WD40 repeat protein | LC |
           chr4:42529594-42530382 | 20130731
          Length = 262

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 74/92 (80%), Gaps = 1/92 (1%)

Query: 215 IYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKASSHVPLKILSIEDGTVLKSFNH 274
           ++KVFDLKNYT LYS S  NVQ I IS GIML IF + S H+P+KI+SIEDG VLK F++
Sbjct: 1   MFKVFDLKNYTFLYSFSFSNVQRINISSGIMLFIFQRRSDHIPIKIISIEDGLVLKEFSY 60

Query: 275 LLYRNKKVDFIEQFNEKLLVKQENENLQILDV 306
            L+ NK+VDFI Q NEKLLVKQ+N NLQILD+
Sbjct: 61  -LHWNKEVDFIVQCNEKLLVKQDNVNLQILDL 91


>Medtr6g460700.1 | hypothetical protein | LC |
          chr6:20972946-20970305 | 20130731
          Length = 218

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 41/57 (71%), Gaps = 3/57 (5%)

Query: 4  GGGRRITVSPRPCCGRRVV--AKKGPRRGG-AVDGFVNSVKKLQRREISSKRDRAFT 57
          G GRRITVSPRPCC RRV   AKK   RGG  VD F+N+VKKLQRREIS K    FT
Sbjct: 39 GTGRRITVSPRPCCSRRVRVDAKKKTSRGGRTVDEFINNVKKLQRREISLKHYSVFT 95