Miyakogusa Predicted Gene

Lj1g3v1090980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1090980.1 Non Characterized Hit- tr|K4D258|K4D258_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.28,3e-19,SUBFAMILY NOT NAMED,NULL; NASCENT POLYPEPTIDE
ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED,NULL; seg,NUL,CUFF.26791.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092970.1 | nascent proteinassociated complex alpha chain ...   136   6e-33
Medtr3g092980.2 | nascent proteinassociated complex alpha chain ...   112   1e-25
Medtr3g092980.1 | nascent proteinassociated complex alpha chain ...   111   2e-25
Medtr7g088680.1 | nascent proteinassociated complex alpha chain ...    87   4e-18
Medtr3g093750.1 | hypothetical protein | HC | chr3:42832436-4283...    53   8e-08

>Medtr3g092970.1 | nascent proteinassociated complex alpha chain |
           HC | chr3:42497928-42500253 | 20130731
          Length = 227

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 86/137 (62%), Gaps = 3/137 (2%)

Query: 1   MAPGPVVDA-SSEAEALEQVLSAEETTLKKKPQPQEDDAPIVXXXXXXXXXXXXXXXXXX 59
           MAPGPV+DA ++E+E  +Q+ S +ETTLKKKPQP+EDDAPI+                  
Sbjct: 1   MAPGPVIDAPATESEVEQQIPSVDETTLKKKPQPEEDDAPIIEDVKDDDKDDEDDDEDDD 60

Query: 60  XXXXXXXXXXGALXXXXXXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISK 119
                      AL                 AMLKLGLKPVTGVSRVTIKRTKNILFFISK
Sbjct: 61  DEDDDDKED--ALAGADGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNILFFISK 118

Query: 120 PDVFKSPNSETYVIFGE 136
           PDVFKSPNSETY+IFGE
Sbjct: 119 PDVFKSPNSETYIIFGE 135


>Medtr3g092980.2 | nascent proteinassociated complex alpha chain |
           HC | chr3:42501153-42503353 | 20130731
          Length = 220

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 81/137 (59%), Gaps = 9/137 (6%)

Query: 1   MAPGPVVDASSEAEALEQVLSAEETTLKKKPQPQE-DDAPIVXXXXXXXXXXXXXXXXXX 59
           M+PGP++DA+++  A +Q+ S +ETTLK KP PQE DDAPIV                  
Sbjct: 1   MSPGPIIDAAADGAADQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDDDKDESEDEEDDE 60

Query: 60  XXXXXXXXXXGALXXXXXXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISK 119
                       +                 AMLKLGLKP+ GV+RVTIKRTKN++FFISK
Sbjct: 61  SPQD--------VGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVTIKRTKNVMFFISK 112

Query: 120 PDVFKSPNSETYVIFGE 136
           PDVFKSPNSETYVIFGE
Sbjct: 113 PDVFKSPNSETYVIFGE 129


>Medtr3g092980.1 | nascent proteinassociated complex alpha chain |
           HC | chr3:42500811-42503374 | 20130731
          Length = 218

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 80/137 (58%), Gaps = 11/137 (8%)

Query: 1   MAPGPVVDASSEAEALEQVLSAEETTLKKKPQPQE-DDAPIVXXXXXXXXXXXXXXXXXX 59
           M+PGP++DA+++  A +Q+ S +ETTLK KP PQE DDAPIV                  
Sbjct: 1   MSPGPIIDAAADGAADQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDDDKDESEDEEDDE 60

Query: 60  XXXXXXXXXXGALXXXXXXXXXXXXXXXXXAMLKLGLKPVTGVSRVTIKRTKNILFFISK 119
                                         AMLKLGLKP+ GV+RVTIKRTKN++FFISK
Sbjct: 61  SPQGGTEGSK----------QSRSEKKSRKAMLKLGLKPIDGVTRVTIKRTKNVMFFISK 110

Query: 120 PDVFKSPNSETYVIFGE 136
           PDVFKSPNSETYVIFGE
Sbjct: 111 PDVFKSPNSETYVIFGE 127


>Medtr7g088680.1 | nascent proteinassociated complex alpha chain |
           HC | chr7:34572677-34570419 | 20130731
          Length = 203

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 44/47 (93%)

Query: 90  AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           AMLKLG+K VTGVSRVTIK++KNILF ISKPDVFKSP S+TY+IFGE
Sbjct: 71  AMLKLGMKAVTGVSRVTIKKSKNILFVISKPDVFKSPTSDTYIIFGE 117


>Medtr3g093750.1 | hypothetical protein | HC |
           chr3:42832436-42836000 | 20130731
          Length = 530

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 26/30 (86%)

Query: 107 IKRTKNILFFISKPDVFKSPNSETYVIFGE 136
           IKRTKNI+FFISK DV KS NS+TY++F E
Sbjct: 419 IKRTKNIMFFISKLDVIKSSNSDTYIMFEE 448