Miyakogusa Predicted Gene

Lj1g3v1074620.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074620.3 tr|Q7V2R9|Q7V2R9_PROMP Light repressed protein A
homolog OS=Prochlorococcus marinus subsp. pastoris ,39.76,3e-19,no
description,Ribosomal protein S30Ae/sigma 54 modulation protein;
Ribosome binding protein Y (YfiA,CUFF.26709.3
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092720.1 | sigma 54 modulation protein/S30EA ribosomal pr...   230   6e-61

>Medtr3g092720.1 | sigma 54 modulation protein/S30EA ribosomal
           protein | HC | chr3:42367168-42364192 | 20130731
          Length = 353

 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 132/162 (81%), Gaps = 1/162 (0%)

Query: 41  IVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEEDSETTYASIDLVSSIIQR 100
           +VRE+DVRLSTRGGGEFGRGPRT RCEVTLFTKRHGVVRAEE +ETTYASIDLVSS+IQR
Sbjct: 163 LVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQR 222

Query: 101 KLRKIKEKVSDHGRHMKGFNRAKVRXXXXXXXXXXXXXXISPLEEEGEATLVEVVRTKYF 160
           KLRKIKEK +DHGRHMKG NR K R              ISP +EE E  + EVVRTKYF
Sbjct: 223 KLRKIKEKETDHGRHMKGSNRLKFR-EAVLPLPTEDETEISPQKEEEEELIEEVVRTKYF 281

Query: 161 DMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 202
           DMPPLTV EAI+QL  V H FYAFRNEE+GE+NIVYKRKEGG
Sbjct: 282 DMPPLTVFEAIDQLEMVAHDFYAFRNEESGEVNIVYKRKEGG 323