Miyakogusa Predicted Gene

Lj1g3v1074620.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074620.2 tr|C1EFG3|C1EFG3_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_109404,46.67,1e-18,no description,Ribosomal protein
S30Ae/sigma 54 modulation protein; Ribosome binding protein Y
(YfiA,CUFF.26709.2
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092720.1 | sigma 54 modulation protein/S30EA ribosomal pr...   220   5e-58

>Medtr3g092720.1 | sigma 54 modulation protein/S30EA ribosomal
           protein | HC | chr3:42367168-42364192 | 20130731
          Length = 353

 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 126/146 (86%), Gaps = 2/146 (1%)

Query: 36  TSTFWGFKLKHAATSTVSAADNSTNTFRAVRNSWDGPLSSVKLIIQGKNLDLTDAVKQHV 95
           TS F   KLK+AAT+T +    S  +   VR SWDGPLSSVKLIIQGKN+ L DAVKQHV
Sbjct: 92  TSQF--LKLKYAATTTTTKRGGSGGSLSVVRMSWDGPLSSVKLIIQGKNMQLNDAVKQHV 149

Query: 96  EDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEEDSETT 155
           E+KVG+AVQKHS++VRE+DVRLSTRGGGEFGRGPRT RCEVTLFTKRHGVVRAEE +ETT
Sbjct: 150 EEKVGRAVQKHSYLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETT 209

Query: 156 YASIDLVSSIIQRKLRKIKEKVSDHG 181
           YASIDLVSS+IQRKLRKIKEK +DHG
Sbjct: 210 YASIDLVSSVIQRKLRKIKEKETDHG 235