Miyakogusa Predicted Gene

Lj1g3v1073610.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1073610.2 tr|Q94JR0|Q94JR0_ARATH At1g32790 OS=Arabidopsis
thaliana PE=2 SV=1,42.86,0.000000000007,RRM,RNA recognition motif
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nu,CUFF.26724.2
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422...   172   6e-44
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422...   167   1e-42
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297...   144   2e-35

>Medtr3g092550.1 | CTC-interacting domain protein | HC |
           chr3:42290596-42284870 | 20130731
          Length = 384

 Score =  172 bits (436), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 89/92 (96%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTN+DKKLTQ+DVK+FFESICGEVQRLRLLGD++HSTRIAFVEF VAESAI A
Sbjct: 293 MCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAA 352

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGV+LGSLPIRVSPSKTPVR+R+ R+PMH
Sbjct: 353 LSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH 384



 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+++T+  +   F + CG+V   R+ GD N   R AFVEF     A  A
Sbjct: 196 MIRRTVYVSDIDQQVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEVGARAA 254

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           L+ SG +LG  P+RV PSKT +   +P
Sbjct: 255 LNLSGTMLGYYPLRVLPSKTAIAPVNP 281


>Medtr3g092510.1 | CTC-interacting domain protein | HC |
           chr3:42267137-42262435 | 20130731
          Length = 376

 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 86/91 (94%), Gaps = 1/91 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD+ HSTRIAFVEF VAESAI A
Sbjct: 286 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAA 345

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSR-SPRSP 90
           LSCSGVILG+LPIRVSPSKTPVR+R SPRSP
Sbjct: 346 LSCSGVILGALPIRVSPSKTPVRARSSPRSP 376



 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  + + F + CG+V   R+ GD N   R AF+EF   ESA  A
Sbjct: 189 MIRRTVYVSDIDQLVTEEQLASLFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEESARAA 247

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           +S SG +LG  P+RV PSKT +   +P
Sbjct: 248 VSLSGTMLGYYPLRVLPSKTAIAPVNP 274


>Medtr2g070540.1 | CTC-interacting domain protein | HC |
           chr2:29723724-29729859 | 20130731
          Length = 298

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 78/88 (88%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RT+YCTNIDKK++Q++VKNFFES CGEV RLRLLGD  HSTRIAFVEF +AESAI A
Sbjct: 207 MCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVA 266

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPR 88
           L+CSG++LG+ PIRVSPSKTPVR R  R
Sbjct: 267 LNCSGMLLGTQPIRVSPSKTPVRPRVAR 294



 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AFVEF     A  AL+ 
Sbjct: 113 RTVYVSDIDQHVTEERLAALFTN-CGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNL 171

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 172 GGTVLGYYPVRVLPSKTAILPVNP 195