Miyakogusa Predicted Gene

Lj1g3v1073610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1073610.1 Non Characterized Hit- tr|A5CA87|A5CA87_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,46.43,0.000000000002,seg,NULL; RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no desc,CUFF.26724.1
         (100 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422...   143   4e-35
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422...   142   8e-35
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297...   122   5e-29

>Medtr3g092550.1 | CTC-interacting domain protein | HC |
           chr3:42290596-42284870 | 20130731
          Length = 384

 Score =  143 bits (360), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/73 (89%), Positives = 72/73 (98%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RTIYCTN+DKKLTQ+DVK+FFESICGEVQRLRLLGD++HSTRIAFVEF VAESAIAA
Sbjct: 293 MCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAA 352

Query: 61  LSCSGVILGSLPI 73
           LSCSGV+LGSLPI
Sbjct: 353 LSCSGVVLGSLPI 365



 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           M  RT+Y ++ID+++T+  +   F + CG+V   R+ GD N   R AFVEF     A AA
Sbjct: 196 MIRRTVYVSDIDQQVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEVGARAA 254

Query: 61  LSCSGVILGSLPI 73
           L+ SG +LG  P+
Sbjct: 255 LNLSGTMLGYYPL 267


>Medtr3g092510.1 | CTC-interacting domain protein | HC |
           chr3:42267137-42262435 | 20130731
          Length = 376

 Score =  142 bits (357), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD+ HSTRIAFVEF VAESAIAA
Sbjct: 286 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAA 345

Query: 61  LSCSGVILGSLPI 73
           LSCSGVILG+LPI
Sbjct: 346 LSCSGVILGALPI 358



 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           M  RT+Y ++ID+ +T+  + + F + CG+V   R+ GD N   R AF+EF   ESA AA
Sbjct: 189 MIRRTVYVSDIDQLVTEEQLASLFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEESARAA 247

Query: 61  LSCSGVILGSLPI 73
           +S SG +LG  P+
Sbjct: 248 VSLSGTMLGYYPL 260


>Medtr2g070540.1 | CTC-interacting domain protein | HC |
           chr2:29723724-29729859 | 20130731
          Length = 298

 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/73 (75%), Positives = 66/73 (90%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAA 60
           MC+RT+YCTNIDKK++Q++VKNFFES CGEV RLRLLGD  HSTRIAFVEF +AESAI A
Sbjct: 207 MCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVA 266

Query: 61  LSCSGVILGSLPI 73
           L+CSG++LG+ PI
Sbjct: 267 LNCSGMLLGTQPI 279



 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F + CG+V   R+ GD +   R AFVEF     A AAL+ 
Sbjct: 113 RTVYVSDIDQHVTEERLAALFTN-CGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNL 171

Query: 64  SGVILGSLPI 73
            G +LG  P+
Sbjct: 172 GGTVLGYYPV 181